Mercurial > repos > erasmus-medical-center > dr_disco
diff test-data/integrate_tmprss-erg.hg38.gtf @ 3:5348cfd3ba5c draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit b6ccc6d8a9a9061207040561b494b7cf2ee3f885
| author | erasmus-medical-center |
|---|---|
| date | Thu, 10 Aug 2017 05:38:27 -0400 |
| parents | |
| children | 3de621c44cf9 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/integrate_tmprss-erg.hg38.gtf Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,159 @@ +chr21 ensembl_havana gene 38380027 38661780 . - . gene_id "ENSG00000157554"; gene_version "18"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +chr21 havana CDS 38498363 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38445404 38445621 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; 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gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41473446 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000391784"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; +chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000391784"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2";