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view test-data/integrate_test_terg_s041.out.txt @ 3:5348cfd3ba5c draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit b6ccc6d8a9a9061207040561b494b7cf2ee3f885
author erasmus-medical-center
date Thu, 10 Aug 2017 05:38:27 -0400
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shared-id	fusion	chr-A	pos-A	direction-A	pos-A-acceptor	pos-A-donor	chr-B	pos-B	direction-B	pos-A-acceptor	pos-A-donor	genomic-distance	filter-status	circRNA	intronic/exonic	score	soft+hardclips	n-split-reads	n-discordant-reads	n-edges	n-nodes-A	n-nodes-B	n-splice-junc-A	n-splice-junc-B	entropy-bp-edge	entropy-all-edges	bp-pos-stddev	entropy-disco-bps	lr-A-slope	lr-A-intercept	lr-A-rvalue	lr-A-pvalue	lr-A-stderr	lr-B-slope	lr-B-intercept	lr-B-rvalue	lr-B-pvalue	lr-B-stderr	disco/split	clips/score	nodes/edge	frameshift=0	frameshift=+1	frameshift=+2	data-structure
1	TMPRSS2->ERG	chr21	38487350	-	200	0	chr21	41479719	+	0	200	2992369	valid	linear	intronic	151	96	48	7	1	1	1	0	0	0.869	0.869	0.2887	0.8124	2.1465	5.6435	0.9817	0	0.0571	1.9162	26.2818	0.99	0	0.0376	0.1458	0.3179	2				chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7)
1	TMPRSS2->ERG	chr21	38445621	-	200	0	chr21	41498118	+	0	200	3052497	valid	linear	exonic	588	378	189	21	14	7	9	2	4	0.7421	0.8197	0	0.7162	0.7344	19.9882	0.9657	0	0.0178	0.7194	21.976	0.9648	0	0.0177	0.1111	0.3214	1.1429	TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl			chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2)
2	chr21:36338771->chr21:36344707	chr21	36338771	+	0	10	chr21	36344707	-	10	0	5936	valid	circular	exonic	117	58	38	3	2	2	2	0	0	0.8536	0.8591	2.436	0.871	2.1714	19.1829	0.9605	0	0.1021	2.0941	32.6902	0.9725	0	0.0814	0.0789	0.2479	2				chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1)
3	chr21:29329693->chr21:29321220	chr21	29321220	+	10	0	chr21	29329693	-	0	10	8473	valid	circular	exonic	49	35	15	4	4	4	3	0	0	0.8605	0.8018	0	0.6667	8.3531	34.3077	0.9863	0	0.4412	9.4685	14.5897	0.9701	0	0.749	0.2667	0.3571	1.75				chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4)
4	chr21:33432871<->chr21:33414887	chr21	33414887	+	5	5	chr21	33432871	-	5	5	17984	valid	circular	exonic	20	12	6	2	3	3	2	1	0	0.8277	0.9167	0	0.75	12.6	50.8	0.7995	0.1045	5.4663	12.8	24.2	0.8072	0.0987	5.4049	0.3333	0.3	1.6667				chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4)