Mercurial > repos > erasmus-medical-center > dr_disco
changeset 4:3de621c44cf9 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit 272a4e52b9b11adee8d681a2e84802e945d1112a
| author | erasmus-medical-center |
|---|---|
| date | Thu, 14 Sep 2017 04:30:12 -0400 |
| parents | 5348cfd3ba5c |
| children | 76a3992021c1 |
| files | macros.xml test-data/fix_test-01.fixed.bam test-data/integrate_test_terg_s041.out.no-gtf.txt test-data/integrate_test_terg_s041.out.txt test-data/integrate_tmprss-erg.hg38.gtf |
| diffstat | 5 files changed, 345 insertions(+), 15 deletions(-) [+] |
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--- a/macros.xml Thu Aug 10 05:38:27 2017 -0400 +++ b/macros.xml Thu Sep 14 04:30:12 2017 -0400 @@ -1,12 +1,12 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="0.9.0">dr-disco</requirement> + <requirement type="package" version="0.10.0">dr-disco</requirement> <yield/> </requirements> </xml> - <token name="@TOOL_VERSION@">0.9.0</token> + <token name="@TOOL_VERSION@">0.10.0</token> <xml name="version_command"> <version_command>dr-disco --version | head -n 1</version_command> @@ -14,7 +14,6 @@ <xml name="citations"> <citations> - <!--<citation type="doi"></citation>--> <citation type="bibtex"> @unpublished{dr_disco, author = {Youri Hoogstrate},
--- a/test-data/integrate_test_terg_s041.out.no-gtf.txt Thu Aug 10 05:38:27 2017 -0400 +++ b/test-data/integrate_test_terg_s041.out.no-gtf.txt Thu Sep 14 04:30:12 2017 -0400 @@ -1,6 +1,6 @@ -shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge frameshift=0 frameshift=+1 frameshift=+2 data-structure -1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) -1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) -2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) -3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) -4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4) +shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge full-gene-disregulation frameshift=0 frameshift=+1 frameshift=+2 data-structure +1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) +1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000492833.5)-ensembl_havana TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1) TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0) chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) +2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) +3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) +4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4)
--- a/test-data/integrate_test_terg_s041.out.txt Thu Aug 10 05:38:27 2017 -0400 +++ b/test-data/integrate_test_terg_s041.out.txt Thu Sep 14 04:30:12 2017 -0400 @@ -1,6 +1,6 @@ -shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge frameshift=0 frameshift=+1 frameshift=+2 data-structure -1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) -1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) -2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) -3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) -4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4) +shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge full-gene-disregulation frameshift=0 frameshift=+1 frameshift=+2 data-structure +1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) +1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000492833.5)-ensembl_havana TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1) TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0) chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) +2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) +3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) +4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4)
--- a/test-data/integrate_tmprss-erg.hg38.gtf Thu Aug 10 05:38:27 2017 -0400 +++ b/test-data/integrate_tmprss-erg.hg38.gtf Thu Sep 14 04:30:12 2017 -0400 @@ -1,159 +1,490 @@ chr21 ensembl_havana gene 38380027 38661780 . - . gene_id "ENSG00000157554"; gene_version "18"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +chr21 havana transcript 38380027 38498442 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; tag "basic"; transcript_support_level "1"; +chr21 havana exon 38498363 38498442 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; exon_id "ENSE00001535525"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 havana CDS 38498363 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana start_codon 38498378 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; tag "basic"; transcript_support_level "1"; +chr21 havana exon 38445404 38445621 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; exon_id "ENSE00003712731"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 havana CDS 38445404 38445621 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana exon 38423410 38423561 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "3"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; exon_id "ENSE00003508916"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 havana CDS 38423410 38423561 . - 1 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "3"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana exon 38403506 38403709 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "4"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; exon_id "ENSE00003536380"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 havana CDS 38403506 38403709 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "4"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana exon 38402557 38402637 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; exon_id "ENSE00003462848"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 havana CDS 38402557 38402637 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana exon 38392376 38392444 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; exon_id "ENSE00003491473"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 havana CDS 38392376 38392444 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana exon 38391659 38391715 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "7"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; exon_id "ENSE00003585332"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 havana CDS 38391659 38391715 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "7"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana exon 38390995 38391042 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "8"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; exon_id "ENSE00001033342"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 havana CDS 38390995 38391042 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "8"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana exon 38380027 38383923 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; exon_id "ENSE00001535545"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 havana CDS 38383406 38383923 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana stop_codon 38383403 38383405 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; tag "basic"; transcript_support_level "1"; +chr21 havana five_prime_utr 38498381 38498442 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; tag "basic"; transcript_support_level "1"; +chr21 havana three_prime_utr 38380027 38383402 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; tag "basic"; transcript_support_level "1"; +chr21 havana transcript 38380027 38498442 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38498363 38498442 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001535525"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38498363 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana start_codon 38498378 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38445404 38445621 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003712731"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38445404 38445621 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38423410 38423561 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "3"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003508916"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38423410 38423561 . - 1 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "3"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38403506 38403709 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "4"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003536380"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38403506 38403709 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "4"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38402557 38402637 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003462848"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38402557 38402637 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38400574 38400645 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003486142"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38400574 38400645 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38391659 38391715 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "7"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003585332"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38391659 38391715 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "7"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38390995 38391042 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "8"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001033342"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38390995 38391042 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "8"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38380027 38383923 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001535545"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38383406 38383923 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana stop_codon 38383403 38383405 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +chr21 havana five_prime_utr 38498381 38498442 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +chr21 havana three_prime_utr 38380027 38383402 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +chr21 ensembl_havana transcript 38380027 38498483 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 38498363 38498483 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; exon_id "ENSE00001931764"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 38498363 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana start_codon 38498378 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 38445404 38445621 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; exon_id "ENSE00003712731"; exon_version "1"; tag "basic"; 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chr21 havana CDS 38423410 38423561 . - 1 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "4"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; protein_id "ENSP00000381882"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38403506 38403709 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; exon_id "ENSE00003536380"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38403506 38403709 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; protein_id "ENSP00000381882"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38402557 38402637 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; exon_id "ENSE00003462848"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38402557 38402637 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; protein_id "ENSP00000381882"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38392376 38392444 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "7"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; exon_id "ENSE00003491473"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38392376 38392444 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "7"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; protein_id "ENSP00000381882"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38391659 38391715 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "8"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; exon_id "ENSE00003585332"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38391659 38391715 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "8"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; protein_id "ENSP00000381882"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38390995 38391042 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; exon_id "ENSE00001033342"; exon_version "1"; tag "basic"; transcript_support_level "5"; chr21 havana CDS 38390995 38391042 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; protein_id "ENSP00000381882"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana exon 38380027 38383923 . - . gene_id "ENSG00000157554"; 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tag "basic"; transcript_support_level "5"; +chr21 havana three_prime_utr 38380027 38383402 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398911"; transcript_version "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13657"; tag "basic"; transcript_support_level "5"; +chr21 ensembl_havana transcript 38380027 38661694 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000417133"; transcript_version "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-208"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS46648"; tag "basic"; transcript_support_level "2"; +chr21 ensembl_havana exon 38661658 38661694 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000417133"; transcript_version "6"; 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transcript_version "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-215"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "1"; +chr21 havana exon 38661658 38661694 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000485493"; transcript_version "1"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-215"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00001411978"; exon_version "1"; transcript_support_level "1"; +chr21 havana exon 38584844 38584945 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000485493"; transcript_version "1"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-215"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00001418790"; exon_version "1"; transcript_support_level "1"; +chr21 havana exon 38575662 38575747 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000485493"; transcript_version "1"; exon_number "3"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-215"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003579517"; exon_version "1"; transcript_support_level "1"; +chr21 havana exon 38474027 38474121 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000485493"; transcript_version "1"; exon_number "4"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-215"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00001904038"; exon_version "1"; transcript_support_level "1"; +chr21 havana exon 38470775 38472080 . - . gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000485493"; transcript_version "1"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-215"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00001924224"; exon_version "1"; transcript_support_level "1"; chr21 ensembl_havana gene 41464551 41531116 . - . gene_id "ENSG00000184012"; gene_version "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +chr21 ensembl_havana transcript 41464551 41508159 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41508081 41508159 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001881208"; exon_version "1"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41498119 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00003502036"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41494356 41494578 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00003788834"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41489507 41489593 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00003500399"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41488394 41488513 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001308618"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41480476 41480602 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001328752"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41479172 41479282 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001296879"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41476577 41476620 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001319118"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41473325 41473496 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001291248"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41471806 41471981 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001310536"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41470648 41470743 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001309041"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41468396 41468538 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001324661"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41467734 41467886 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00003786558"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana exon 41464551 41466153 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001919654"; exon_version "1"; tag "basic"; transcript_support_level "1"; chr21 ensembl_havana CDS 41466145 41466153 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000330330"; protein_version "5"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana stop_codon 41466142 41466144 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana five_prime_utr 41508081 41508159 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana five_prime_utr 41498134 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana three_prime_utr 41464551 41466141 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000332149"; transcript_version "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "1"; +chr21 ensembl transcript 41464553 41508065 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41507950 41508065 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001894632"; exon_version "2"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41507950 41508004 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl start_codon 41508002 41508004 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41498119 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00003523611"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41498119 41498189 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41494356 41494578 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00003788834"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41489507 41489593 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00003500399"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41488394 41488513 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001308618"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41480476 41480602 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001328752"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41479172 41479282 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001296879"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41476577 41476620 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001319118"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41473325 41473496 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001291248"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41471806 41471981 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001310536"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41470648 41470743 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001309041"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41468396 41468538 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001324661"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41467734 41467886 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00003786558"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl exon 41464553 41466153 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; exon_id "ENSE00001485252"; exon_version "2"; tag "basic"; transcript_support_level "2"; chr21 ensembl CDS 41466145 41466153 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; protein_id "ENSP00000381588"; protein_version "3"; tag "basic"; transcript_support_level "2"; +chr21 ensembl stop_codon 41466142 41466144 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; tag "basic"; transcript_support_level "2"; +chr21 ensembl five_prime_utr 41508005 41508065 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; tag "basic"; transcript_support_level "2"; +chr21 ensembl three_prime_utr 41464553 41466141 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000398585"; transcript_version "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-202"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54486"; tag "basic"; transcript_support_level "2"; +chr21 havana transcript 41465890 41468102 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000488556"; transcript_version "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-209"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2"; +chr21 havana exon 41467734 41468102 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000488556"; transcript_version "1"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-209"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00001893309"; exon_version "1"; transcript_support_level "2"; +chr21 havana exon 41465890 41466153 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000488556"; transcript_version "1"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-209"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00001872432"; exon_version "1"; transcript_support_level "2"; +chr21 havana transcript 41466009 41507982 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41507950 41507982 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001710402"; exon_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41498119 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00003502036"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41494356 41494578 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00003788834"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41489507 41489593 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00003500399"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41488394 41488513 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001308618"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41480476 41480602 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001328752"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41479172 41479282 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001296879"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41476577 41476620 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001319118"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41473325 41473496 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001291248"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41471806 41471981 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001310536"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41470648 41470743 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001309041"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41468396 41468538 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001324661"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41467734 41467886 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00003786558"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana exon 41466009 41466153 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; exon_id "ENSE00001651579"; exon_version "1"; tag "basic"; transcript_support_level "2"; chr21 havana CDS 41466145 41466153 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana stop_codon 41466142 41466144 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "2"; +chr21 havana five_prime_utr 41507950 41507982 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "2"; +chr21 havana five_prime_utr 41498134 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "2"; +chr21 havana three_prime_utr 41466009 41466141 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; tag "basic"; transcript_support_level "2"; +chr21 havana transcript 41467734 41531116 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41530985 41531116 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001620762"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41529973 41530218 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001620678"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41498119 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003502036"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41494356 41494578 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003788834"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41489507 41489593 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003500399"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41488394 41488513 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001308618"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41480476 41480602 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001328752"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41479172 41479282 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001296879"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41476577 41476620 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001319118"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41473325 41473496 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001291248"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41471806 41471981 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001310536"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41470648 41470743 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001309041"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41468396 41468538 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001324661"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana exon 41467734 41467886 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003786558"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; chr21 havana CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana five_prime_utr 41530985 41531116 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana five_prime_utr 41529973 41530218 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana five_prime_utr 41498134 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana transcript 41467766 41468837 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000469395"; transcript_version "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-208"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2"; +chr21 havana exon 41468396 41468837 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000469395"; transcript_version "1"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00001909048"; exon_version "1"; transcript_support_level "2"; +chr21 havana exon 41467766 41467886 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000469395"; transcript_version "1"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00001950249"; exon_version "1"; transcript_support_level "2"; +chr21 havana transcript 41473446 41508092 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana exon 41508081 41508092 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00002442487"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana exon 41498119 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003502036"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; chr21 havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana exon 41494356 41494578 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003788834"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana exon 41489507 41489593 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003500399"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; chr21 havana CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana exon 41480476 41480602 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001328752"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; chr21 havana CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana exon 41479172 41479282 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001296879"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; chr21 havana CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana exon 41476577 41476620 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001319118"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; chr21 havana CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana exon 41473446 41473496 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001665763"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; chr21 havana CDS 41473446 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana five_prime_utr 41508081 41508092 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana five_prime_utr 41498134 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana transcript 41486467 41508158 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000497881"; transcript_version "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-211"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "2"; +chr21 havana exon 41508081 41508158 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000497881"; transcript_version "5"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-211"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00001296629"; exon_version "2"; transcript_support_level "2"; +chr21 havana exon 41498119 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000497881"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-211"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003609166"; exon_version "1"; transcript_support_level "2"; +chr21 havana exon 41486467 41488025 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000497881"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-211"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00001846183"; exon_version "1"; transcript_support_level "2"; +chr21 havana transcript 41488489 41508114 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000463138"; transcript_version "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-207"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "5"; +chr21 havana exon 41508081 41508114 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000463138"; transcript_version "1"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-207"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00001876229"; exon_version "1"; transcript_support_level "5"; +chr21 havana exon 41498119 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000463138"; transcript_version "1"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-207"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003609166"; exon_version "1"; transcript_support_level "5"; +chr21 havana exon 41489507 41489593 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000463138"; transcript_version "1"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-207"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003467838"; exon_version "1"; transcript_support_level "5"; +chr21 havana exon 41488489 41488513 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000463138"; transcript_version "1"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-207"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00001843326"; exon_version "1"; transcript_support_level "5"; +chr21 havana transcript 41494356 41506604 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; +chr21 havana exon 41506445 41506604 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00001686361"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; +chr21 havana exon 41498119 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003502036"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; chr21 havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000391784"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; +chr21 havana start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; +chr21 havana exon 41494356 41494578 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003788834"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000391784"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; +chr21 havana five_prime_utr 41506445 41506604 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; +chr21 havana five_prime_utr 41498134 41498189 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; +chr21 havana transcript 41529789 41531098 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000489201"; transcript_version "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-210"; transcript_source "havana"; transcript_biotype "retained_intron"; tag "mRNA_end_NF"; transcript_support_level "3"; +chr21 havana exon 41530985 41531098 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000489201"; transcript_version "1"; exon_number "1"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-210"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00001838338"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3"; +chr21 havana exon 41529789 41530218 . - . gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000489201"; transcript_version "1"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-210"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00001948395"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3";