Mercurial > repos > erasmus-medical-center > mycrobiota

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit aadbfac9c48191cac625f10590082a6d1a0bfd09
author erasmus-medical-center
date Tue, 29 Jan 2019 12:13:23 -0500
parents 607c5e7e0a64
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607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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1 Linux version
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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3 Using ReadLine
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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5 Running 64Bit Version
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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7 mothur v.1.36.1
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8 Last updated: 7/27/2015
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10 by
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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11 Patrick D. Schloss
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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13 Department of Microbiology & Immunology
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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14 University of Michigan
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15 pschloss@umich.edu
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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16 http://www.mothur.org
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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18 When using, please cite:
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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19 Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.
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21 Distributed under the GNU General Public License
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23 Type 'help()' for information on the commands that are available
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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25 Type 'quit()' to exit program
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26 Interactive Mode
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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29 mothur > summary.seqs(fasta=fasta.dat,name=name.dat,processors=1)
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31 Using 1 processors.
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33 Start End NBases Ambigs Polymer NumSeqs
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34 Minimum: 2943 11738 249 0 4 1
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35 2.5%-tile: 2943 11738 250 0 4 14
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36 25%-tile: 2943 11738 255 0 5 135
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37 Median: 2943 11738 256 0 5 269
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
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38 75%-tile: 2943 11738 256 0 5 403
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39 97.5%-tile: 2943 11738 258 0 5 524
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40 Maximum: 2943 11738 260 0 6 537
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41 Mean: 2943 11738 255.723 0 4.94786
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42 # of unique seqs: 158
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43 total # of seqs: 537
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45 Output File Names:
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46 fasta.summary
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48 It took 0 secs to summarize 537 sequences.
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49 quit
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51 mothur > quit