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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit aadbfac9c48191cac625f10590082a6d1a0bfd09
author erasmus-medical-center
date Tue, 29 Jan 2019 12:13:23 -0500
parents 607c5e7e0a64
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Linux version

Using ReadLine

Running 64Bit Version

mothur v.1.36.1
Last updated: 7/27/2015

by
Patrick D. Schloss

Department of Microbiology & Immunology
University of Michigan
pschloss@umich.edu
http://www.mothur.org

When using, please cite:
Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.

Distributed under the GNU General Public License

Type 'help()' for information on the commands that are available

Type 'quit()' to exit program
Interactive Mode


mothur > summary.seqs(fasta=fasta.dat,name=name.dat,processors=1)

Using 1 processors.

		Start	End	NBases	Ambigs	Polymer	NumSeqs
Minimum:	2943	11738	249	0	4	1
2.5%-tile:	2943	11738	250	0	4	14
25%-tile:	2943	11738	255	0	5	135
Median: 	2943	11738	256	0	5	269
75%-tile:	2943	11738	256	0	5	403
97.5%-tile:	2943	11738	258	0	5	524
Maximum:	2943	11738	260	0	6	537
Mean:	2943	11738	255.723	0	4.94786
# of unique seqs:	158
total # of seqs:	537

Output File Names: 
fasta.summary

It took 0 secs to summarize 537 sequences.
quit

mothur > quit