Mercurial > repos > erasmus-medical-center > mycrobiota

comparison test-data/summarylog3.txt @ 0:607c5e7e0a64 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
author erasmus-medical-center
date Wed, 13 Dec 2017 10:09:50 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:607c5e7e0a64
1 Linux version
2
3 Using ReadLine
4
5 Running 64Bit Version
6
7 mothur v.1.36.1
8 Last updated: 7/27/2015
9
10 by
11 Patrick D. Schloss
12
13 Department of Microbiology & Immunology
14 University of Michigan
15 pschloss@umich.edu
16 http://www.mothur.org
17
18 When using, please cite:
19 Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.
20
21 Distributed under the GNU General Public License
22
23 Type 'help()' for information on the commands that are available
24
25 Type 'quit()' to exit program
26 Interactive Mode
27
28
29 mothur > summary.seqs(fasta=fasta.dat,name=name.dat,processors=1)
30
31 Using 1 processors.
32
33 Start End NBases Ambigs Polymer NumSeqs
34 Minimum: 2943 11738 249 0 4 1
35 2.5%-tile: 2943 11738 250 0 4 14
36 25%-tile: 2943 11738 255 0 5 135
37 Median: 2943 11738 256 0 5 269
38 75%-tile: 2943 11738 256 0 5 403
39 97.5%-tile: 2943 11738 258 0 5 524
40 Maximum: 2943 11738 260 0 6 537
41 Mean: 2943 11738 255.723 0 4.94786
42 # of unique seqs: 158
43 total # of seqs: 537
44
45 Output File Names:
46 fasta.summary
47
48 It took 0 secs to summarize 537 sequences.
49 quit
50
51 mothur > quit