Mercurial > repos > erasmus-medical-center > split_pairs
comparison split_pairs.xml @ 0:7c48290ad757 draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
| author | erasmus-medical-center |
|---|---|
| date | Mon, 04 Jun 2018 07:59:07 -0400 |
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| -1:000000000000 | 0:7c48290ad757 |
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| 1 <tool id="split_pairs" name="Split Dataset Pairs" version="0.1"> | |
| 2 <description>into two regular datasets</description> | |
| 3 <command detect_errors="aggressive"><![CDATA[ | |
| 4 cp '$pair_input.forward' '$fwd' && | |
| 5 cp '$pair_input.reverse' '$rev' | |
| 6 ]]></command> | |
| 7 <inputs> | |
| 8 <param name="pair_input" type="data_collection" collection_type="paired" label="Paired dataset"/> | |
| 9 </inputs> | |
| 10 <outputs> | |
| 11 <data name="fwd" format="auto" label="${tool.name} on ${on_string}: forward file"/> | |
| 12 <data name="rev" format="auto" label="${tool.name} on ${on_string}: reverse file"/> | |
| 13 </outputs> | |
| 14 <tests> | |
| 15 <test> | |
| 16 <param name="pair_input"> | |
| 17 <collection type="paired"> | |
| 18 <element name="forward" value="forward.txt" /> | |
| 19 <element name="reverse" value="reverse.txt" /> | |
| 20 </collection> | |
| 21 </param> | |
| 22 <output name="fwd" file="forward.txt" /> | |
| 23 <output name="rev" file="reverse.txt" /> | |
| 24 </test> | |
| 25 </tests> | |
| 26 <help><![CDATA[ | |
| 27 Takes as input a dataset pair, and outputs the forward and reverse files as two regular files. | |
| 28 | |
| 29 This tool does not alter the datasets, it is simply a convenience tool for workflows. | |
| 30 ]]></help> | |
| 31 </tool> |