Mercurial > repos > erasmus-medical-center > split_pairs

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
author erasmus-medical-center
date Mon, 04 Jun 2018 07:59:07 -0400
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7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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1 <tool id="split_pairs" name="Split Dataset Pairs" version="0.1">
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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2 <description>into two regular datasets</description>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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3 <command detect_errors="aggressive"><![CDATA[
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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4 cp '$pair_input.forward' '$fwd' &&
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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5 cp '$pair_input.reverse' '$rev'
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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6 ]]></command>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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7 <inputs>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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8 <param name="pair_input" type="data_collection" collection_type="paired" label="Paired dataset"/>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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9 </inputs>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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10 <outputs>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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11 <data name="fwd" format="auto" label="${tool.name} on ${on_string}: forward file"/>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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12 <data name="rev" format="auto" label="${tool.name} on ${on_string}: reverse file"/>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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13 </outputs>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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14 <tests>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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15 <test>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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16 <param name="pair_input">
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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17 <collection type="paired">
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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18 <element name="forward" value="forward.txt" />
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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19 <element name="reverse" value="reverse.txt" />
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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20 </collection>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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21 </param>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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22 <output name="fwd" file="forward.txt" />
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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23 <output name="rev" file="reverse.txt" />
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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24 </test>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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25 </tests>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
erasmus-medical-center
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26 <help><![CDATA[
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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27 Takes as input a dataset pair, and outputs the forward and reverse files as two regular files.
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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28
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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29 This tool does not alter the datasets, it is simply a convenience tool for workflows.
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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30 ]]></help>
7c48290ad757 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/split_pairs commit e935c9b4548e868799b48939adc5f4646e2219c9
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31 </tool>