Mercurial > repos > erick-antezana > onto-toolkit

annotate onto-toolkit/tool_conf.xml @ 0:4484575e4186

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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author erick-antezana
date Tue, 07 Jun 2011 17:51:45 -0400
parents
children d2d26d330236
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4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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1 <?xml version="1.0"?>
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2 <toolbox>
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3 <section name="Get Data" id="getext">
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4 <tool file="data_source/upload.xml"/>
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5 <tool file="data_source/ucsc_tablebrowser.xml" />
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6 <tool file="data_source/ucsc_tablebrowser_test.xml" />
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7 <tool file="data_source/ucsc_tablebrowser_archaea.xml" />
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8 <tool file="data_source/bx_browser.xml" />
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9 <tool file="data_source/microbial_import.xml" />
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10 <tool file="data_source/biomart.xml" />
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11 <tool file="data_source/biomart_test.xml" />
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12 <tool file="data_source/gramene_mart.xml" />
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13 <tool file="data_source/flymine.xml" />
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14 <tool file="data_source/flymine_test.xml" />
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15 <tool file="data_source/modmine.xml" />
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16 <tool file="data_source/ratmine.xml" />
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17 <tool file="data_source/wormbase.xml" />
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18 <tool file="data_source/wormbase_test.xml" />
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19 <tool file="data_source/eupathdb.xml" />
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20 <tool file="data_source/encode_db.xml" />
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21 <tool file="data_source/epigraph_import.xml" />
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22 <tool file="data_source/epigraph_import_test.xml" />
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23 <tool file="data_source/hbvar.xml" />
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24 <tool file="validation/fix_errors.xml" />
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25 </section>
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26 <section name="OBO Ontology manipulation" id="ONTO-ToolKit">
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27 <tool file="ontology/get_ancestor_terms.xml"/>
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28 <tool file="ontology/get_parent_terms.xml"/>
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29 <tool file="ontology/get_descendent_terms.xml"/>
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30 <tool file="ontology/get_child_terms.xml"/>
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31 <tool file="ontology/term_id_vs_term_def.xml"/>
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32 <tool file="ontology/term_id_vs_term_name.xml"/>
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33 <tool file="ontology/get_relationship_types.xml"/>
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34 <tool file="ontology/obo2rdf.xml" />
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35 <tool file="ontology/obo2tran.xml" />
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36 <tool file="ontology/obo2owl.xml" />
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37 <tool file="ontology/get_subontology_from.xml" />
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38 <tool file="ontology/get_list_intersection_from.xml" />
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39 <tool file="ontology/get_intersection_ontology_from.xml" />
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40 </section>
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41 <section name="Send Data" id="send">
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42 <tool file="data_destination/epigraph.xml" />
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43 <tool file="data_destination/epigraph_test.xml" />
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44 </section>
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45 <section name="ENCODE Tools" id="EncodeTools">
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46 <tool file="encode/gencode_partition.xml" />
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47 <tool file="encode/random_intervals.xml" />
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48 </section>
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49 <section name="Lift-Over" id="liftOver">
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50 <tool file="extract/liftOver_wrapper.xml" />
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51 </section>
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52 <section name="Text Manipulation" id="textutil">
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53 <tool file="filters/fixedValueColumn.xml" />
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54 <tool file="stats/column_maker.xml" />
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55 <tool file="filters/catWrapper.xml" />
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56 <tool file="filters/cutWrapper.xml" />
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57 <tool file="filters/mergeCols.xml" />
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58 <tool file="filters/convert_characters.xml" />
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59 <tool file="filters/CreateInterval.xml" />
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60 <tool file="filters/cutWrapper.xml" />
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61 <tool file="filters/changeCase.xml" />
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62 <tool file="filters/pasteWrapper.xml" />
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63 <tool file="filters/remove_beginning.xml" />
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64 <tool file="filters/headWrapper.xml" />
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65 <tool file="filters/tailWrapper.xml" />
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66 <tool file="filters/trimmer.xml" />
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67 <tool file="stats/dna_filtering.xml" />
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68 </section>
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69 <section name="Filter and Sort" id="filter">
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70 <tool file="stats/filtering.xml" />
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71 <tool file="filters/sorter.xml" />
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72 <tool file="filters/grep.xml" />
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73 </section>
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74 <section name="Join, Subtract and Group" id="group">
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75 <tool file="filters/joiner.xml" />
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76 <tool file="filters/compare.xml"/>
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77 <tool file="new_operations/subtract_query.xml"/>
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78 <tool file="stats/grouping.xml" />
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79 </section>
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80 <section name="Convert Formats" id="convert">
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81 <tool file="filters/axt_to_concat_fasta.xml" />
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82 <tool file="filters/axt_to_fasta.xml" />
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83 <tool file="filters/axt_to_lav.xml" />
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84 <tool file="filters/bed2gff.xml" />
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85 <tool file="fasta_tools/fasta_to_tabular.xml" />
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86 <tool file="filters/gff2bed.xml" />
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87 <tool file="filters/lav_to_bed.xml" />
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88 <tool file="maf/maf_to_bed.xml" />
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89 <tool file="maf/maf_to_interval.xml" />
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90 <tool file="maf/maf_to_fasta.xml" />
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91 <tool file="fasta_tools/tabular_to_fasta.xml" />
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92 <tool file="fastx_toolkit/fastq_to_fasta.xml" />
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93 <tool file="filters/wiggle_to_simple.xml" />
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94 </section>
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95 <section name="Extract Features" id="features">
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96 <tool file="filters/ucsc_gene_bed_to_exon_bed.xml" />
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97 <tool file="extract/extract_GFF_Features.xml" />
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98 </section>
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99 <section name="Fetch Sequences" id="fetchSeq">
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100 <tool file="extract/extract_genomic_dna.xml" />
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101 </section>
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102 <section name="Fetch Alignments" id="fetchAlign">
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103 <tool file="maf/interval2maf_pairwise.xml" />
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104 <tool file="maf/interval2maf.xml" />
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105 <tool file="maf/maf_split_by_species.xml"/>
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106 <tool file="maf/interval_maf_to_merged_fasta.xml" />
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107 <tool file="maf/genebed_maf_to_fasta.xml"/>
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108 <tool file="maf/maf_stats.xml"/>
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109 <tool file="maf/maf_thread_for_species.xml"/>
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110 <tool file="maf/maf_limit_to_species.xml"/>
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111 <tool file="maf/maf_limit_size.xml"/>
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112 <tool file="maf/maf_by_block_number.xml"/>
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113 <tool file="maf/maf_reverse_complement.xml"/>
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114 <tool file="maf/maf_filter.xml"/>
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115 </section>
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116 <section name="Get Genomic Scores" id="scores">
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117 <tool file="stats/wiggle_to_simple.xml" />
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118 <tool file="stats/aggregate_binned_scores_in_intervals.xml" />
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119 <tool file="extract/phastOdds/phastOdds_tool.xml" />
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120 </section>
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121 <section name="Operate on Genomic Intervals" id="bxops">
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122 <tool file="new_operations/intersect.xml" />
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123 <tool file="new_operations/subtract.xml" />
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124 <tool file="new_operations/merge.xml" />
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125 <tool file="new_operations/concat.xml" />
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126 <tool file="new_operations/basecoverage.xml" />
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127 <tool file="new_operations/coverage.xml" />
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128 <tool file="new_operations/complement.xml" />
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129 <tool file="new_operations/cluster.xml" id="cluster" />
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130 <tool file="new_operations/join.xml" />
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131 <tool file="new_operations/get_flanks.xml" />
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132 <tool file="new_operations/flanking_features.xml" />
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133 </section>
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134 <section name="Statistics" id="stats">
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135 <tool file="stats/gsummary.xml" />
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136 <tool file="filters/uniq.xml" />
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137 <tool file="stats/cor.xml" />
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138 </section>
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139 <section name="Graph/Display Data" id="plots">
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140 <tool file="plotting/histogram2.xml" />
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141 <tool file="plotting/scatterplot.xml" />
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142 <tool file="plotting/bar_chart.xml" />
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143 <tool file="plotting/xy_plot.xml" />
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144 <tool file="visualization/GMAJ.xml" />
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145 <tool file="visualization/LAJ.xml" />
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146 <tool file="visualization/build_ucsc_custom_track.xml" />
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147 </section>
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148 <section name="Regional Variation" id="regVar">
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149 <tool file="regVariation/windowSplitter.xml" />
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150 <tool file="regVariation/featureCounter.xml" />
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151 <tool file="regVariation/quality_filter.xml" />
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152 <tool file="regVariation/maf_cpg_filter.xml" />
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153 <tool file="regVariation/getIndels_2way.xml" />
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154 <tool file="regVariation/getIndels_3way.xml" />
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155 <tool file="regVariation/getIndelRates_3way.xml" />
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156 <tool file="regVariation/substitutions.xml" />
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157 <tool file="regVariation/substitution_rates.xml" />
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158 <tool file="regVariation/microsats_alignment_level.xml" />
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159 <tool file="regVariation/microsats_mutability.xml" />
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160 </section>
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161 <section name="Multiple regression" id="multReg">
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162 <tool file="regVariation/linear_regression.xml" />
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163 <tool file="regVariation/best_regression_subsets.xml" />
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164 <tool file="regVariation/rcve.xml" />
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165 </section>
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166 <section name="Evolution" id="hyphy">
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167 <tool file="hyphy/hyphy_branch_lengths_wrapper.xml" />
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168 <tool file="hyphy/hyphy_nj_tree_wrapper.xml" />
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169 <tool file="hyphy/hyphy_dnds_wrapper.xml" />
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170 <tool file="evolution/mutate_snp_codon.xml" />
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171 </section>
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172 <section name="Metagenomic analyses" id="tax_manipulation">
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173 <tool file="taxonomy/gi2taxonomy.xml" />
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174 <tool file="taxonomy/t2t_report.xml" />
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175 <tool file="taxonomy/t2ps_wrapper.xml" />
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176 <tool file="taxonomy/find_diag_hits.xml" />
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177 <tool file="taxonomy/lca.xml" />
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178 <tool file="taxonomy/poisson2test.xml" />
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179 </section>
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180 <section name="FASTA manipulation" id="fasta_manipulation">
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181 <tool file="fasta_tools/fasta_compute_length.xml" />
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182 <tool file="fasta_tools/fasta_filter_by_length.xml" />
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183 <tool file="fasta_tools/fasta_concatenate_by_species.xml" />
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184 <tool file="fasta_tools/fasta_to_tabular.xml" />
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185 <tool file="fasta_tools/tabular_to_fasta.xml" />
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186 <tool file="fastx_toolkit/fasta_formatter.xml" />
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187 <tool file="fastx_toolkit/fasta_nucleotide_changer.xml" />
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188 <tool file="fastx_toolkit/fastx_collapser.xml" />
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189 </section>
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190 <section name="NGS: QC and manipulation" id="cshl_library_information">
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191 <label text="Generic FASTQ data" id="fastq" />
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192 <tool file="next_gen_conversion/fastq_gen_conv.xml" />
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193 <tool file="fastx_toolkit/fastq_quality_converter.xml" />
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194 <tool file="fastx_toolkit/fastx_quality_statistics.xml" />
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195 <tool file="fastx_toolkit/fastq_quality_boxplot.xml" />
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196 <tool file="fastx_toolkit/fastx_nucleotides_distribution.xml" />
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197 <tool file="metag_tools/split_paired_reads.xml" />
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198 <label text="Roche-454 data" id="454" />
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199 <tool file="metag_tools/short_reads_figure_score.xml" />
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200 <tool file="metag_tools/short_reads_trim_seq.xml" />
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201 <label text="AB-SOLiD data" id="solid" />
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202 <tool file="next_gen_conversion/solid2fastq.xml" />
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203 <tool file="solid_tools/solid_qual_stats.xml" />
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204 <tool file="solid_tools/solid_qual_boxplot.xml" />
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205 </section>
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206 <section name="NGS: Mapping" id="solexa_tools">
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207 <tool file="sr_mapping/lastz_wrapper.xml" />
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208 <tool file="sr_mapping/bowtie_wrapper.xml" />
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209 <tool file="sr_mapping/bowtie_color_wrapper.xml" />
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210 <tool file="sr_mapping/bwa_wrapper.xml" />
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211 <tool file="metag_tools/megablast_wrapper.xml" />
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212 <tool file="metag_tools/megablast_xml_parser.xml" />
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213 </section>
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214 <section name="NGS: SAM Tools" id="samtools">
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215 <tool file="samtools/sam_bitwise_flag_filter.xml" />
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216 <tool file="samtools/sam2interval.xml" />
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217 <tool file="samtools/sam_to_bam.xml" />
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218 <tool file="samtools/sam_merge.xml" />
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219 <tool file="samtools/sam_pileup.xml" />
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220 <tool file="samtools/pileup_parser.xml" />
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221 <tool file="samtools/pileup_interval.xml" />
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222 </section>
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223 <section name="NGS: Peak Calling" id="peak_calling">
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224 <tool file="peak_calling/macs_wrapper.xml" />
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225 <tool file="genetrack/genetrack_indexer.xml" />
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226 <tool file="genetrack/genetrack_peak_prediction.xml" />
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227 </section>
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228 <!--section name="Rg Data" id="rgData1">
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229 <tool file="rgenetics/rgenetics_import.xml"/>
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230 <tool file="rgenetics/rgLpedPbed.xml"/>
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231 <tool file="rgenetics/rgClean.xml"/>
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232 <tool file="rgenetics/rgQC.xml"/>
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233 </section>
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234 <section name="Rg Simulate" id="rgSim1">
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235 <tool file="rgenetics/rgfakePhe.xml"/>
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236 </section>
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237 <section name="Rg Visualise" id="rgVis1">
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238 <tool file="rgenetics/rgQC.xml"/>
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239 <tool file="rgenetics/rgEigPCA2.xml"/>
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240 <tool file="rgenetics/rgQQ.xml"/>
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241 </section>
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242 <section name="Rg Model Data" id="rgModel1">
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243 <tool file="rgenetics/rgGLM.xml"/>
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244 <tool file="rgenetics/rgCaCo.xml"/>
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245 <tool file="rgenetics/rgTDT.xml"/>
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246 </section-->
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247 <!--
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248 TODO: uncomment the following EMBOSS section whenever
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249 moving to test, but comment it in .sample to eliminate
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250 it from buildbot functional tests since these tools
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251 rarely change.
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252 -->
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253 <!--
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254 <section name="EMBOSS" id="EMBOSSLite">
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255 <tool file="emboss_5/emboss_antigenic.xml" />
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256 <tool file="emboss_5/emboss_backtranseq.xml" />
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257 <tool file="emboss_5/emboss_banana.xml" />
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258 <tool file="emboss_5/emboss_biosed.xml" />
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259 <tool file="emboss_5/emboss_btwisted.xml" />
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260 <tool file="emboss_5/emboss_cai_custom.xml" />
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261 <tool file="emboss_5/emboss_cai.xml" />
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262 <tool file="emboss_5/emboss_chaos.xml" />
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263 <tool file="emboss_5/emboss_charge.xml" />
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264 <tool file="emboss_5/emboss_checktrans.xml" />
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265 <tool file="emboss_5/emboss_chips.xml" />
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266 <tool file="emboss_5/emboss_cirdna.xml" />
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267 <tool file="emboss_5/emboss_codcmp.xml" />
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268 <tool file="emboss_5/emboss_coderet.xml" />
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269 <tool file="emboss_5/emboss_compseq.xml" />
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270 <tool file="emboss_5/emboss_cpgplot.xml" />
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271 <tool file="emboss_5/emboss_cpgreport.xml" />
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272 <tool file="emboss_5/emboss_cusp.xml" />
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273 <tool file="emboss_5/emboss_cutseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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274 <tool file="emboss_5/emboss_dan.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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275 <tool file="emboss_5/emboss_degapseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
276 <tool file="emboss_5/emboss_descseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
277 <tool file="emboss_5/emboss_diffseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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278 <tool file="emboss_5/emboss_digest.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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279 <tool file="emboss_5/emboss_dotmatcher.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
280 <tool file="emboss_5/emboss_dotpath.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
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diff changeset
281 <tool file="emboss_5/emboss_dottup.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
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diff changeset
282 <tool file="emboss_5/emboss_dreg.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
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diff changeset
283 <tool file="emboss_5/emboss_einverted.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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284 <tool file="emboss_5/emboss_epestfind.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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285 <tool file="emboss_5/emboss_equicktandem.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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286 <tool file="emboss_5/emboss_est2genome.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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287 <tool file="emboss_5/emboss_etandem.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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288 <tool file="emboss_5/emboss_extractfeat.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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289 <tool file="emboss_5/emboss_extractseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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290 <tool file="emboss_5/emboss_freak.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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291 <tool file="emboss_5/emboss_fuzznuc.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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292 <tool file="emboss_5/emboss_fuzzpro.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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293 <tool file="emboss_5/emboss_fuzztran.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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294 <tool file="emboss_5/emboss_garnier.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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295 <tool file="emboss_5/emboss_geecee.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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296 <tool file="emboss_5/emboss_getorf.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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297 <tool file="emboss_5/emboss_helixturnhelix.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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298 <tool file="emboss_5/emboss_hmoment.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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299 <tool file="emboss_5/emboss_iep.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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300 <tool file="emboss_5/emboss_infoseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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301 <tool file="emboss_5/emboss_isochore.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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302 <tool file="emboss_5/emboss_lindna.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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303 <tool file="emboss_5/emboss_marscan.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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304 <tool file="emboss_5/emboss_maskfeat.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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305 <tool file="emboss_5/emboss_maskseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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306 <tool file="emboss_5/emboss_matcher.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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307 <tool file="emboss_5/emboss_megamerger.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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308 <tool file="emboss_5/emboss_merger.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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309 <tool file="emboss_5/emboss_msbar.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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310 <tool file="emboss_5/emboss_needle.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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311 <tool file="emboss_5/emboss_newcpgreport.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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312 <tool file="emboss_5/emboss_newcpgseek.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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313 <tool file="emboss_5/emboss_newseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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314 <tool file="emboss_5/emboss_noreturn.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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315 <tool file="emboss_5/emboss_notseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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316 <tool file="emboss_5/emboss_nthseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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317 <tool file="emboss_5/emboss_octanol.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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318 <tool file="emboss_5/emboss_oddcomp.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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319 <tool file="emboss_5/emboss_palindrome.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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320 <tool file="emboss_5/emboss_pasteseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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321 <tool file="emboss_5/emboss_patmatdb.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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322 <tool file="emboss_5/emboss_pepcoil.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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323 <tool file="emboss_5/emboss_pepinfo.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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324 <tool file="emboss_5/emboss_pepnet.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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325 <tool file="emboss_5/emboss_pepstats.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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326 <tool file="emboss_5/emboss_pepwheel.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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327 <tool file="emboss_5/emboss_pepwindow.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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328 <tool file="emboss_5/emboss_pepwindowall.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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329 <tool file="emboss_5/emboss_plotcon.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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330 <tool file="emboss_5/emboss_plotorf.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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331 <tool file="emboss_5/emboss_polydot.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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332 <tool file="emboss_5/emboss_preg.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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333 <tool file="emboss_5/emboss_prettyplot.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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334 <tool file="emboss_5/emboss_prettyseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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335 <tool file="emboss_5/emboss_primersearch.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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336 <tool file="emboss_5/emboss_revseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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337 <tool file="emboss_5/emboss_seqmatchall.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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338 <tool file="emboss_5/emboss_seqret.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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339 <tool file="emboss_5/emboss_showfeat.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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340 <tool file="emboss_5/emboss_shuffleseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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341 <tool file="emboss_5/emboss_sigcleave.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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342 <tool file="emboss_5/emboss_sirna.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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343 <tool file="emboss_5/emboss_sixpack.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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344 <tool file="emboss_5/emboss_skipseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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345 <tool file="emboss_5/emboss_splitter.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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346 <tool file="emboss_5/emboss_supermatcher.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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347 <tool file="emboss_5/emboss_syco.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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348 <tool file="emboss_5/emboss_tcode.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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349 <tool file="emboss_5/emboss_textsearch.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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350 <tool file="emboss_5/emboss_tmap.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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351 <tool file="emboss_5/emboss_tranalign.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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352 <tool file="emboss_5/emboss_transeq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
353 <tool file="emboss_5/emboss_trimest.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
354 <tool file="emboss_5/emboss_trimseq.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
355 <tool file="emboss_5/emboss_twofeat.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
356 <tool file="emboss_5/emboss_union.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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357 <tool file="emboss_5/emboss_vectorstrip.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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358 <tool file="emboss_5/emboss_water.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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359 <tool file="emboss_5/emboss_wobble.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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360 <tool file="emboss_5/emboss_wordcount.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
361 <tool file="emboss_5/emboss_wordmatch.xml" />
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
362 </section>
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
363 -->
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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diff changeset
364 </toolbox>