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1 <tool id="get_parent_terms_by_relationship_type" name="Get the terms of a given OBO term through a concrete relationship type" version="1.22">
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2 <description>Collects the terms from a given term in the given OBO ontology, filtered by a relationship type</description>
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3 <command interpreter="perl">/usr/bin/get_parent_terms_by_relationship_type.pl $input_ontology $term_id $rel_id > $output</command>
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4 <inputs>
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5 <param format="text" name="input_ontology" type="data" label="Source file"/>
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6 <param name="term_id" type="text" size="30" value="" label="Term ID" />
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7 <param name="rel_id" type="text" size="30" value="" label="Rel ID" />
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8 </inputs>
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9 <outputs>
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10 <data format="tabular" name="output" />
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11 </outputs>
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12
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13 <tests>
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14 <test>
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15 <param name="input" value="pre_cco.obo"/>
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16 <param name="term_id" value="CCO:B0000073"/>
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17 <param name="rel_id" value="participates_in"/>
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18 <output name="out_file" file="ancestors_rel_filtered.txt"/>
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19 </test>
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20 </tests>
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21
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22 <help>
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23
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24 .. class:: infomark
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25
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26 Collects the terms (list of IDs) from a given term (existing ID) through a given relationship type in the given OBO ontology.
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27 **Example**
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28
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29 id: A
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30 name: A
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31 A part_of B
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32 A part_of D
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33 A participates_in F
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34
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35 Que me devuelva los padres de A along part_of, es decir B y D.
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36
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37 If you ask for the parent terms of **A** along along part_of you will get::
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38
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39 B
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40 D
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41
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42 **More information**
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43
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44 ONTO-PERL: An API supporting the development and analysis of bio-ontologies
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45 E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov
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46 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042
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47
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48 </help>
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49
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50 </tool>
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51
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