Mercurial > repos > erick-antezana > onto-toolkit

annotate onto-toolkit/tools/ontology/get_subontology_from.xml @ 2:77c75bf3fbe6 default tip

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First version
author easr
date Wed, 11 Apr 2012 10:34:56 +0200
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1 <tool id="get_subontology_from" name="Get subontology from a given OBO term" version="1.22">
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2 <description>Extracts a subontology (in OBO format) of a given ontology having as root node the provided term ID</description>
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3 <command interpreter="perl">/usr/bin/get_subontology_from.pl $input_ontology $new_root > $output</command>
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4 <inputs>
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5 <param format="text" name="input_ontology" type="data" label="Source file"/>
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6 <param name="new_root" type="text" size="30" value="" label="Term ID" />
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7 </inputs>
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8 <outputs>
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9 <data format="text" name="output" />
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10 </outputs>
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12 <tests>
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13 <test>
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14 <param name="input_ontology" value="pre_cco_core.obo"/>
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15 <param name="new_root" value="CCO:P0000003"/>
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16 <output name="output" file="sub_ontology.obo"/>
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17 </test>
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18 </tests>
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20 <help>
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22 Extracts a subontology (in OBO format) of a given ontology having as root node the provided term ID.
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24 </help>
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26 </tool>
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