Mercurial > repos > erick-antezana > onto-toolkit

diff onto-toolkit/tools/ontology/get_subontology_from.xml @ 0:4484575e4186

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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author erick-antezana
date Tue, 07 Jun 2011 17:51:45 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/onto-toolkit/tools/ontology/get_subontology_from.xml	Tue Jun 07 17:51:45 2011 -0400
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+<tool id="get_subontology_from" name="Get subontology from a given OBO term" version="1.22">
+  <description>Extracts a subontology (in OBO format) of a given ontology having as root node the provided term ID</description>
+  <command interpreter="perl">/usr/bin/get_subontology_from.pl $input_ontology $new_root > $output</command>
+  <inputs>
+    <param format="text" name="input_ontology" type="data" label="Source file"/>
+    <param name="new_root" type="text" size="30" value="" label="Term ID" />
+  </inputs>
+  <outputs>
+    <data format="text" name="output" />
+  </outputs>
+
+<tests>
+    <test>
+      <param name="input_ontology" value="pre_cco_core.obo"/>
+      <param name="new_root" value="CCO:P0000003"/>
+      <output name="output" file="sub_ontology.obo"/>
+    </test>
+  </tests>
+
+  <help>
+
+Extracts a subontology (in OBO format) of a given ontology having as root node the provided term ID.
+
+ </help>
+
+</tool>
+
+
+
+  
+