Mercurial > repos > erick-antezana > onto-toolkit
comparison onto-toolkit/tools/ontology/get_subontology_from.xml @ 0:4484575e4186
Migrated tool version 0.1 from old tool shed archive to new tool shed repository
| author | erick-antezana |
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| date | Tue, 07 Jun 2011 17:51:45 -0400 |
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| -1:000000000000 | 0:4484575e4186 |
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| 1 <tool id="get_subontology_from" name="Get subontology from a given OBO term" version="1.22"> | |
| 2 <description>Extracts a subontology (in OBO format) of a given ontology having as root node the provided term ID</description> | |
| 3 <command interpreter="perl">/usr/bin/get_subontology_from.pl $input_ontology $new_root > $output</command> | |
| 4 <inputs> | |
| 5 <param format="text" name="input_ontology" type="data" label="Source file"/> | |
| 6 <param name="new_root" type="text" size="30" value="" label="Term ID" /> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="text" name="output" /> | |
| 10 </outputs> | |
| 11 | |
| 12 <tests> | |
| 13 <test> | |
| 14 <param name="input_ontology" value="pre_cco_core.obo"/> | |
| 15 <param name="new_root" value="CCO:P0000003"/> | |
| 16 <output name="output" file="sub_ontology.obo"/> | |
| 17 </test> | |
| 18 </tests> | |
| 19 | |
| 20 <help> | |
| 21 | |
| 22 Extracts a subontology (in OBO format) of a given ontology having as root node the provided term ID. | |
| 23 | |
| 24 </help> | |
| 25 | |
| 26 </tool> | |
| 27 | |
| 28 | |
| 29 | |
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| 31 |