Mercurial > repos > erick-antezana > onto-toolkit
comparison onto-toolkit/tools/ontology/obo2rdf.xml @ 0:4484575e4186
Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author | erick-antezana |
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date | Tue, 07 Jun 2011 17:51:45 -0400 |
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1 <tool id="obo2rdf" name="Convert OBO to RDF" version="1.22"> | |
2 <description>Converts an OBO formatted ontology to RDF/XML format</description> | |
3 <command interpreter="perl">/usr/bin/obo2rdf.pl $input $url > $output</command> | |
4 <inputs> | |
5 <param format="text" name="input" type="data" label="Source file"/> | |
6 <param name="url" type="text" size="50" value="http://" label="URL" /> | |
7 </inputs> | |
8 <outputs> | |
9 <data format="text" name="output" /> | |
10 </outputs> | |
11 | |
12 <tests> | |
13 <test> | |
14 <param name="input" value="pre_cco_core.obo"/> | |
15 <output name="out_file" file="pre_cco_core.rdf"/> | |
16 </test> | |
17 </tests> | |
18 | |
19 <help> | |
20 This tool transforms an OBO formatted ontology (such as the Gene Ontology) to RDF/XML. | |
21 | |
22 More information: | |
23 | |
24 ONTO-PERL: An API supporting the development and analysis of bio-ontologies | |
25 E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov | |
26 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 | |
27 | |
28 </help> | |
29 | |
30 </tool> | |
31 |