Mercurial > repos > erick-antezana > onto-toolkit
annotate onto-toolkit/tools/ontology/obo2rdf.xml @ 0:4484575e4186
Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author | erick-antezana |
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date | Tue, 07 Jun 2011 17:51:45 -0400 |
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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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1 <tool id="obo2rdf" name="Convert OBO to RDF" version="1.22"> |
4484575e4186
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2 <description>Converts an OBO formatted ontology to RDF/XML format</description> |
4484575e4186
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3 <command interpreter="perl">/usr/bin/obo2rdf.pl $input $url > $output</command> |
4484575e4186
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4 <inputs> |
4484575e4186
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5 <param format="text" name="input" type="data" label="Source file"/> |
4484575e4186
Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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6 <param name="url" type="text" size="50" value="http://" label="URL" /> |
4484575e4186
Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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7 </inputs> |
4484575e4186
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8 <outputs> |
4484575e4186
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9 <data format="text" name="output" /> |
4484575e4186
Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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10 </outputs> |
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11 |
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12 <tests> |
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13 <test> |
4484575e4186
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14 <param name="input" value="pre_cco_core.obo"/> |
4484575e4186
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15 <output name="out_file" file="pre_cco_core.rdf"/> |
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16 </test> |
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17 </tests> |
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18 |
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19 <help> |
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20 This tool transforms an OBO formatted ontology (such as the Gene Ontology) to RDF/XML. |
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21 |
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22 More information: |
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23 |
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24 ONTO-PERL: An API supporting the development and analysis of bio-ontologies |
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25 E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov |
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26 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 |
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27 |
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28 </help> |
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29 |
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30 </tool> |
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31 |