Mercurial > repos > erick-antezana > onto-toolkit
diff onto-toolkit/README @ 1:d2d26d330236
v 0.2: tools added for OPPL-galaxy
author | easr |
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date | Wed, 11 Apr 2012 10:33:41 +0200 |
parents | 4484575e4186 |
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--- a/onto-toolkit/README Tue Jun 07 17:51:45 2011 -0400 +++ b/onto-toolkit/README Wed Apr 11 10:33:41 2012 +0200 @@ -4,14 +4,22 @@ ONTO-Toolkit is a collection of Galaxy tools for managing ontologies that are represented in the OBO flat file format (spec 1.2). -Those tools are basically wrappers around the most commonly used tasks +Those tools are basically wrappers around the most commonly used tools provided by the ONTO-PERL suite. See also: - ONTO-PERL: An API supporting the development and analysis of bio-ontologies - Antezana E, Egana M, De Baets B, Kuiper M, Mironov V. - Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 + 1. ONTO-PERL: An API supporting the development and analysis of bio-ontologies + Antezana E, Egana M, De Baets B, Kuiper M, Mironov V. + Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 + + 2. ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies + Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M. + BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8 + + 3. OPPL-Galaxy: Enhancing ontology exploitation in Galaxy with OPPL. + Egana M, Fernandez-Breis JT, Antezana E. + Semantic Web Applications and Tools for Life Sciences (SWAT4LS), London, UK (2011) For installing this collection of tools: @@ -26,14 +34,23 @@ http://main.g2.bx.psu.edu/ -2. ONTO-PERL (version >= 1.18): +2. ONTO-PERL (version >= 1.37): http://search.cpan.org/dist/ONTO-PERL/ +CITING ONTO-Toolkit +=================== + +If you use ONTO-Toolkit in your work, you are kindly requested to cite: + + ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies + Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M. + BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8 + COPYRIGHT AND LICENCE ===================== -Copyright (c) 2010 Erick Antezana. All rights reserved. +Copyright (c) 2010-2012 Erick Antezana. All rights reserved. OONTO-Toolkit is free software; you can redistribute it and/or modify it under the same terms as Perl itself.