annotate planemo_install_history.txt @ 0:bab3a658f74e draft

planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
author eschen42
date Tue, 09 May 2017 18:34:35 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
1 #!/bin/bash
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
2
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
3 # abridged transcript of the steps that I used to test this wrapper
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
4
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
5 ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Linuxbrew/install/master/install)"
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
6
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
7 sudo apt-get install build-essential
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
8
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
9 cat >> ~/.bashrc << .
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
10 # ACE
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
11 export PATH="/home/backdoor/.linuxbrew/bin:$PATH"
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
12 export MANPATH="/home/backdoor/.linuxbrew/share/man:$MANPATH"
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
13 export INFOPATH="/home/backdoor/.linuxbrew/share/info:$INFOPATH"
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
14 .
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
15
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
16 brew update
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
17 brew install python
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
18 brew tap galaxyproject/tap
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
19 brew install planemo
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
20
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
21 git clone https://github.com/HegemanLab/w4mclassfilter_galaxy_wrapper.git
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
22 cd w4mclassfilter_galaxy_wrapper/
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
23
bab3a658f74e planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79
eschen42
parents:
diff changeset
24 ./run_test.sh