Mercurial > repos > estrain > add_header

changeset 2:0c9a80d52e0b draft

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Uploaded
author estrain
date Tue, 30 Oct 2018 13:26:45 -0400
parents 24ce8dc4b5e7
children 61d3765f4070
files add_header.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/add_header.xml	Tue Oct 30 13:26:45 2018 -0400
@@ -0,0 +1,24 @@
+<tool id="add_header" name="add_header" version="0.1">
+    <description>Add header row to tabular data</description>
+    <requirements>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+
+      echo $header | sed s/\,/\\t/g  > new_header.txt;
+      cat new_header.txt $datatable > output.tab
+
+    ]]></command>
+    <inputs>
+      <param name="header" type="text" label="List of Column headers (comma delimited, e.g. C1,C2,...)"/>
+      <param name="datatable" type="data" format="tabular" label="Data File (tab-delimted)"/>
+    </inputs>
+    <outputs>
+      <data format="tabular" name="Data Table" label="${tool.name} on ${on_string}" from_work_dir="*.tab"/>
+    </outputs>
+
+    <help><![CDATA[
+
+    ]]></help>
+     <citations>
+    </citations>
+</tool>