Mercurial > repos > estrain > data_manager_mlst

changeset 2:1930c02df64e draft default tip

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Uploaded
author estrain
date Thu, 18 Jan 2024 03:11:43 +0000
parents a2da81d3378b
children
files data_manager_mlst/data_manager/data_manager_mlst.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_mlst/data_manager/data_manager_mlst.py	Thu Jan 18 03:08:40 2024 +0000
+++ b/data_manager_mlst/data_manager/data_manager_mlst.py	Thu Jan 18 03:11:43 2024 +0000
@@ -10,7 +10,7 @@
 def download_pubmlst_databases():
     """Download databases from pubmlst."""
     try:
-        subprocess.run(["cp", "-R", "/mnt/data/mlst/db","pubmlst"], check=True)
+        subprocess.run(["mlst-download_pub_mlst", "-d", "pubmlst"], check=True)
     except subprocess.CalledProcessError as e:
         print(f"Error downloading databases: {e}")
         sys.exit(1)