Mercurial > repos > estrain > microrunqc

diff microrunqc.xml @ 15:c3eb197a283b draft

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Uploaded
author estrain
date Wed, 24 May 2023 17:57:57 +0000
parents 59e137488c63
children b07d5fec5942
line wrap: on
line diff
--- a/microrunqc.xml	Wed May 24 17:24:37 2023 +0000
+++ b/microrunqc.xml	Wed May 24 17:57:57 2023 +0000
@@ -105,7 +105,7 @@
     #end if
     ${outname}.fasta > ${outname}.mlst_raw.tsv;
     
-    perl mlstAddFields.pl ${outname}.mlst_raw.tsv > ${outname}.mlst.tsv;
+    perl $__tool_directory__/mlstAddFields.pl ${outname}.mlst_raw.tsv > ${outname}.mlst.tsv;
 
     python $__tool_directory__/run_fastq_scan.py --fastq ${bwalist} --out fq_out.tab --type ${fqscan};