Mercurial > repos > estrain > microrunqc

changeset 15:c3eb197a283b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author estrain
date Wed, 24 May 2023 17:57:57 +0000
parents d326e0177a2a
children b07d5fec5942
files microrunqc.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/microrunqc.xml	Wed May 24 17:24:37 2023 +0000
+++ b/microrunqc.xml	Wed May 24 17:57:57 2023 +0000
@@ -105,7 +105,7 @@
     #end if
     ${outname}.fasta > ${outname}.mlst_raw.tsv;
     
-    perl mlstAddFields.pl ${outname}.mlst_raw.tsv > ${outname}.mlst.tsv;
+    perl $__tool_directory__/mlstAddFields.pl ${outname}.mlst_raw.tsv > ${outname}.mlst.tsv;
 
     python $__tool_directory__/run_fastq_scan.py --fastq ${bwalist} --out fq_out.tab --type ${fqscan};