Mercurial > repos > estrain > srst2

changeset 1:43cc60256036 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author estrain
date Sat, 18 May 2019 19:09:56 -0400
parents efc202baae1f
children 6787d952242e
files srst2v2.xml
diffstat 1 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/srst2v2.xml	Sun Dec 03 13:28:11 2017 -0500
+++ b/srst2v2.xml	Sat May 18 19:09:56 2019 -0400
@@ -1,6 +1,6 @@
-<tool id="srst2" name="SRST2 - Short Read Sequence Typer (v2)" version="0.2.0">
+<tool id="srst2" name="SRST2 - Short Read Sequence Typer (v2)" version="0.2.3">
     <requirements>
-        <requirement type="package" version="0.2.0">srst2</requirement>
+        <requirement type="package" version="0.2.3">srst2</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #if $paired_conditional.sPaired == "paired"
@@ -76,16 +76,17 @@
           <option value="paired">Paired-end</option>
         </param>
         <when value="single">
-          <param name="fastq1" type="data" format="fastq" label="FASTQ file" help="FASTQ" />
+          <param name="fastq1" type="data" format="fastq,fastqsanger" label="FASTQ file" help="FASTQ" />
         </when>
         <when value="paired">
-          <param name="fastq1" type="data" format="fastq" label="Forward FASTQ file" help="FASTQ" />
-          <param name="fastq2" type="data" format="fastq" label="Reverse FASTQ file" help="FASTQ" />
+          <param name="fastq1" type="data" format="fastq,fastqsanger" label="Forward FASTQ file" help="FASTQ" />
+          <param name="fastq2" type="data" format="fastq,fastqsanger" label="Reverse FASTQ file" help="FASTQ" />
         </when>
       </conditional>
 
       <conditional name="job_type">
         <param name="job" type="select" label="MLST or Gene Presence/Absence?">
+          <option value="none">none</option>
           <option value="mlst">MLST</option>
           <option value="gene">Gene</option>
         </param>