Mercurial > repos > ethevenot > checkformat
annotate build.xml @ 0:0d8099822c49 draft
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
| author | ethevenot |
|---|---|
| date | Sat, 30 Jul 2016 12:06:35 -0400 |
| parents | |
| children | e194eec8e70c |
| rev | line source |
|---|---|
|
0
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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1 <project name="checkformat" default="all"> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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2 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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3 <property name="tool.xml" value="checkFormat_config.xml"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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5 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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6 <!--~~~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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7 ~ ALL ~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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8 ~~~~~--> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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9 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
10 <target name="all"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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11 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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12 <!--~~~~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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13 ~ TEST ~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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14 ~~~~~--> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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15 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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16 <target name="test" depends="planemo.lint,planemo.test"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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17 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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18 <!--~~~~~~~~~~~~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
19 ~ PLANEMO LINT ~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
20 ~~~~~~~~~~~~~--> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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21 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
22 <target name="planemo.lint"> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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23 <exec executable="planemo" failonerror="true"> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
24 <arg value="lint"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
25 <arg value="${tool.xml}"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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26 </exec> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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27 </target> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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28 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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29 <!--~~~~~~~~~~~~ |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
30 ~ PLANEMO TEST ~ |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
31 ~~~~~~~~~~~~~--> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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32 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
33 <target name="planemo.test" depends="planemo.conda.install"> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
34 <exec executable="planemo" failonerror="true"> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
35 <arg value="test"/> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
36 <arg value="--conda_prefix"/> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
37 <arg value="${conda.dir}"/> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
38 <arg value="--galaxy_branch"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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39 <arg value="release_16.01"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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40 <arg value="--conda_dependency_resolution"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
41 <arg value="${tool.xml}"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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42 </exec> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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43 </target> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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44 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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45 <!--~~~~~~~~~~~~~~~~~~~~~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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46 ~ PLANEMO CONDA INSTALL ~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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47 ~~~~~~~~~~~~~~~~~~~~~~--> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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48 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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49 <target name="planemo.conda.install" depends="planemo.conda.init"> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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50 <exec executable="planemo" failonerror="true"> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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51 <arg value="conda_install"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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52 <arg value="--conda_prefix"/> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
53 <arg value="${conda.dir}"/> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
54 <arg value="${tool.xml}"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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55 </exec> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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56 </target> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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57 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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58 <!--~~~~~~~~~~~~~~~~~~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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59 ~ PLANEMO CONDA INIT ~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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60 ~~~~~~~~~~~~~~~~~~~--> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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61 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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62 <target name="planemo.conda.init"> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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63 <exec executable="planemo" failonerror="true"> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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64 <arg value="conda_init"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
65 <arg value="--conda_prefix"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
66 <arg value="${conda.dir}"/> |
|
0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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67 </exec> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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68 </target> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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69 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
|
70 <!--~~~~~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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71 ~ CLEAN ~ |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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72 ~~~~~~--> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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73 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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74 <target name="clean"> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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75 <delete dir="${conda.dir}"/> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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76 </target> |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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77 |
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0d8099822c49
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff
changeset
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78 </project> |