--- a/runit/output/information.txt	Wed May 03 10:49:08 2017 -0400
+++ b/runit/output/information.txt	Mon Jan 22 11:32:41 2018 -0500
@@ -1,22 +1,31 @@
 
-Start of the 'proFIA' Galaxy module call: Wed 03 May 2017 01:18:28 PM
+Start of the 'proFIA' Galaxy module call: Mon 08 Jan 2018 07:23:11 PM
 files_root_directory	 plasFIA 
 
 1) Peak detection step ('proFIAset'):
 
 2) Peak alignment ('group.FIA'):
 
- 722  groups have been done .
+ 707  groups have been done .
 
 3) Creating the peak table ('makeDataMatrix'):
 
-4) Imputing missing values ('imputeMissingValues.WKNN_TN'):
+4) Imputing missing values ('impute.randomForest'):
+  missForest iteration 1 in progress...done!
+  missForest iteration 2 in progress...done!
+  missForest iteration 3 in progress...done!
+  missForest iteration 4 in progress...done!
+  missForest iteration 5 in progress...done!
+  missForest iteration 6 in progress...done!
+  missForest iteration 7 in progress...done!
+  missForest iteration 8 in progress...done!
+  missForest iteration 9 in progress...done!
+  missForest iteration 10 in progress...done!
 
 5) Plotting ('plot'):
 PCA
-3 samples x 644 variables
+3 samples x 707 variables
 standard scaling of predictors
-78 excluded variables (near zero variance)
       R2X(cum) pre ort
 Total        1   2   0
 null device 
@@ -24,12 +33,41 @@
 
 6) Printing ('show'):
 A "proFIAset" object containing  1  classes.
-Missing values have been imputed. 
-2101  peaks detected.
-722  features have been grouped.
+Data matrix has been created. 
+2089  peaks detected.
+707  features have been grouped.
 The data matrix is avalaible.
-Memory usage: 0.419 MB
+Memory usage: 0.409 MB
 
 7) Exporting ('exportDataMatrix', 'exportSampleMetadata', 'exportVariableMetadata'):
 
-End of 'proFIA' Galaxy module call: 2017-05-03 13:27:09
+End of 'proFIA' Galaxy module call: 2018-01-08 19:27:06
+
+
+
+============================================================================
+Additional information about the call:
+
+1) Parameters:
+                     value                          
+dataMatrix_out       "./output/dataMatrix.tsv"      
+sampleMetadata_out   "./output/sampleMetadata.tsv"  
+variableMetadata_out "./output/variableMetadata.tsv"
+figure               "./output/figure.pdf"          
+information          "./output/information.txt"     
+zipfile              "./plasfia/plasFIA.zip"        
+library              "NULL"                         
+ppmN                 "2"                            
+dmzN                 "5e-04"                        
+ppmGroupN            "1"                            
+dmzGroupN            "5e-04"                        
+fracGroupN           "0.1"                          
+imputeC              "randomForest"                 
+
+2) Session Info:
+R version 3.3.1 (2016-06-21) 
+Main packages:
+proFIA 1.4.0 	xcms 1.50.1 	Biobase 2.34.0 	ProtGenerics 1.6.0 	BiocGenerics 0.20.0 	mzR 2.8.1 	Rcpp 0.12.10 	batch 1.1.4 	
+Other loaded packages:
+splines 3.3.1 	itertools 0.1.3 	MASS 7.3.45 	BiocParallel 1.8.1 	missForest 1.4 	lattice 0.20.34 	quadprog 1.5.5 	foreach 1.4.4 	plyr 1.8.4 	grid 3.3.1 	iterators 1.0.9 	multtest 2.30.0 	survival 2.41.2 	randomForest 4.6.12 	Matrix 1.2.8 	RColorBrewer 1.1.2 	S4Vectors 0.12.2 	codetools 0.2.15 	MassSpecWavelet 1.40.0 	pracma 1.9.9 	ropls 1.6.2 	stats4 3.3.1 	minpack.lm 1.2.1 	RANN 2.5 	
+============================================================================