view runit/output/information.txt @ 1:4753e64cf694 draft

planemo upload for repository https://github.com/workflow4metabolomics/profia.git commit 0a90b8ee1577263ace397124d8b0e34d1e630f51
author ethevenot
date Wed, 03 May 2017 10:49:08 -0400
parents 39ccace77270
children 3f8ae071bdda
line wrap: on
line source


Start of the 'proFIA' Galaxy module call: Wed 03 May 2017 01:18:28 PM
files_root_directory	 plasFIA 

1) Peak detection step ('proFIAset'):

2) Peak alignment ('group.FIA'):

 722  groups have been done .

3) Creating the peak table ('makeDataMatrix'):

4) Imputing missing values ('imputeMissingValues.WKNN_TN'):

5) Plotting ('plot'):
PCA
3 samples x 644 variables
standard scaling of predictors
78 excluded variables (near zero variance)
      R2X(cum) pre ort
Total        1   2   0
null device 
          1 

6) Printing ('show'):
A "proFIAset" object containing  1  classes.
Missing values have been imputed. 
2101  peaks detected.
722  features have been grouped.
The data matrix is avalaible.
Memory usage: 0.419 MB

7) Exporting ('exportDataMatrix', 'exportSampleMetadata', 'exportVariableMetadata'):

End of 'proFIA' Galaxy module call: 2017-05-03 13:27:09