view runit/output/information.txt @ 0:39ccace77270 draft

planemo upload for repository https://github.com/workflow4metabolomics/profia.git commit 2757590af8c7ba9833ba3bebd7da7f96b20d1128-dirty
author ethevenot
date Sun, 26 Mar 2017 17:37:12 -0400
parents
children 4753e64cf694
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Start of the 'proFIA' Galaxy module call: Sat 25 Mar 2017 08:55:32 PM
files_root_directory	 plasFIA 

1) Peak detection step ('proFIAset'):

2) Peak alignment ('group.FIA'):

 719  groups have been done .

3) Creating the peak table ('makeDataMatrix'):

4) Imputing missing values ('imputeMissingValues.WKNN_TN'):

5) Plotting ('plot'):
PCA
3 samples x 648 variables
standard scaling of predictors
71 excluded variables (near zero variance)
      R2X(cum) pre ort
Total        1   2   0
null device 
          1 

6) Printing ('show'):
A "proFIAset" object containing  1  classes.
Missing values have been imputed. 
2161  peaks detected.
719  features have been grouped.
The data matrix is avalaible.
Memory usage: 0.425 MB

7) Exporting ('exportDataMatrix', 'exportSampleMetadata', 'exportVariableMetadata'):

End of 'proFIA' Galaxy module call: 2017-03-25 21:22:13