Mercurial > repos > ethevenot > profia

comparison runit/output/information.txt @ 0:39ccace77270 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/workflow4metabolomics/profia.git commit 2757590af8c7ba9833ba3bebd7da7f96b20d1128-dirty
author ethevenot
date Sun, 26 Mar 2017 17:37:12 -0400
parents
children 4753e64cf694
comparison
equal deleted inserted replaced
-1:000000000000 0:39ccace77270
1
2 Start of the 'proFIA' Galaxy module call: Sat 25 Mar 2017 08:55:32 PM
3 files_root_directory plasFIA
4
5 1) Peak detection step ('proFIAset'):
6
7 2) Peak alignment ('group.FIA'):
8
9 719 groups have been done .
10
11 3) Creating the peak table ('makeDataMatrix'):
12
13 4) Imputing missing values ('imputeMissingValues.WKNN_TN'):
14
15 5) Plotting ('plot'):
16 PCA
17 3 samples x 648 variables
18 standard scaling of predictors
19 71 excluded variables (near zero variance)
20 R2X(cum) pre ort
21 Total 1 2 0
22 null device
23 1
24
25 6) Printing ('show'):
26 A "proFIAset" object containing 1 classes.
27 Missing values have been imputed.
28 2161 peaks detected.
29 719 features have been grouped.
30 The data matrix is avalaible.
31 Memory usage: 0.425 MB
32
33 7) Exporting ('exportDataMatrix', 'exportSampleMetadata', 'exportVariableMetadata'):
34
35 End of 'proFIA' Galaxy module call: 2017-03-25 21:22:13