Mercurial > repos > ethevenot > profia
diff runit/output/information.txt @ 0:39ccace77270 draft
planemo upload for repository https://github.com/workflow4metabolomics/profia.git commit 2757590af8c7ba9833ba3bebd7da7f96b20d1128-dirty
author | ethevenot |
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date | Sun, 26 Mar 2017 17:37:12 -0400 |
parents | |
children | 4753e64cf694 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/runit/output/information.txt Sun Mar 26 17:37:12 2017 -0400 @@ -0,0 +1,35 @@ + +Start of the 'proFIA' Galaxy module call: Sat 25 Mar 2017 08:55:32 PM +files_root_directory plasFIA + +1) Peak detection step ('proFIAset'): + +2) Peak alignment ('group.FIA'): + + 719 groups have been done . + +3) Creating the peak table ('makeDataMatrix'): + +4) Imputing missing values ('imputeMissingValues.WKNN_TN'): + +5) Plotting ('plot'): +PCA +3 samples x 648 variables +standard scaling of predictors +71 excluded variables (near zero variance) + R2X(cum) pre ort +Total 1 2 0 +null device + 1 + +6) Printing ('show'): +A "proFIAset" object containing 1 classes. +Missing values have been imputed. +2161 peaks detected. +719 features have been grouped. +The data matrix is avalaible. +Memory usage: 0.425 MB + +7) Exporting ('exportDataMatrix', 'exportSampleMetadata', 'exportVariableMetadata'): + +End of 'proFIA' Galaxy module call: 2017-03-25 21:22:13