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planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 60ebb3e8919c09c18f89a5362750ae45ca84d0c2
author ethevenot
date Wed, 28 Feb 2018 09:15:47 -0500
parents eacea1349a7c
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
diff changeset
1 <project name="transformation" default="all">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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3 <property name="tool.xml" value="transformation_config.xml"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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6 <!--~~~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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7 ~ ALL ~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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8 ~~~~~-->
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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10 <target name="all"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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12 <!--~~~~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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13 ~ TEST ~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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14 ~~~~~-->
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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16 <target name="test" depends="planemo.lint,planemo.test"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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18 <!--~~~~~~~~~~~~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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19 ~ PLANEMO LINT ~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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20 ~~~~~~~~~~~~~-->
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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21
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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22 <target name="planemo.lint">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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23 <exec executable="planemo" failonerror="true">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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24 <arg value="lint"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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25 <arg value="${tool.xml}"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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26 </exec>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
diff changeset
27 </target>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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29 <!--~~~~~~~~~~~~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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30 ~ PLANEMO TEST ~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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31 ~~~~~~~~~~~~~-->
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
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32
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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33 <target name="planemo.test" depends="planemo.conda.install">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
diff changeset
34 <exec executable="planemo" failonerror="true">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
diff changeset
35 <arg value="test"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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36 <arg value="--conda_prefix"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
diff changeset
37 <arg value="${conda.dir}"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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38 <arg value="--galaxy_branch"/>
3
cc0e9eff0de2 planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 60ebb3e8919c09c18f89a5362750ae45ca84d0c2
ethevenot
parents: 0
diff changeset
39 <arg value="release_17.05"/>
0
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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40 <arg value="--conda_dependency_resolution"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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41 <arg value="${tool.xml}"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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42 </exec>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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43 </target>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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44
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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45 <!--~~~~~~~~~~~~~~~~~~~~~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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46 ~ PLANEMO CONDA INSTALL ~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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47 ~~~~~~~~~~~~~~~~~~~~~~-->
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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48
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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49 <target name="planemo.conda.install" depends="planemo.conda.init">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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50 <exec executable="planemo" failonerror="true">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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51 <arg value="conda_install"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
diff changeset
52 <arg value="--conda_prefix"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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53 <arg value="${conda.dir}"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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54 <arg value="${tool.xml}"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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55 </exec>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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56 </target>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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57
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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58 <!--~~~~~~~~~~~~~~~~~~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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59 ~ PLANEMO CONDA INIT ~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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60 ~~~~~~~~~~~~~~~~~~~-->
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
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61
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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62 <target name="planemo.conda.init">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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63 <exec executable="planemo" failonerror="true">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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64 <arg value="conda_init"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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65 <arg value="--conda_prefix"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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66 <arg value="${conda.dir}"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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67 </exec>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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68 </target>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
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69
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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70 <!--~~~~~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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71 ~ CLEAN ~
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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72 ~~~~~~-->
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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73
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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74 <target name="clean">
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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75 <delete dir="${conda.dir}"/>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
parents:
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76 </target>
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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77
eacea1349a7c planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
ethevenot
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78 </project>