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comparison test/test-univ @ 4:3017385625f6 draft

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planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit a81d4cc1df719dcc66def660927abda74972afaa
author ethevenot
date Thu, 11 Jan 2018 10:21:17 -0500
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3:140290de7986 4:3017385625f6
1 #!/bin/bash
2
3 # Constants {{{1
4 ################################################################
5
6 PROG_PATH=$(dirname $0)
7
8 # MAIN {{{1
9 ################################################################
10
11 $PROG_PATH/../univariate_wrapper.R dataMatrix_in $PROG_PATH/../test-data/dataMatrix.tsv sampleMetadata_in $PROG_PATH/../test-data/sampleMetadata.tsv variableMetadata_in $PROG_PATH/../test-data/variableMetadata.tsv facC qual tesC kruskal adjC fdr thrN 0.05 variableMetadata_out $PROG_PATH/outputVariableMetadata.tsv
12
13 if ! diff "$PROG_PATH/outputVariableMetadata.tsv" "$PROG_PATH/../test-data/output-variableMetadata.tsv" ; then
14 echo "Incorrect output variable metadata." >&2
15 exit 1
16 fi