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planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 957d0e442c875f7cf8461866fac9695175ab371b
author ethevenot
date Wed, 28 Feb 2018 06:29:34 -0500
parents 3017385625f6
children
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#!/bin/bash

# Constants {{{1
################################################################

PROG_PATH=$(dirname $0)

# MAIN {{{1
################################################################

$PROG_PATH/../univariate_wrapper.R dataMatrix_in $PROG_PATH/../test-data/dataMatrix.tsv sampleMetadata_in $PROG_PATH/../test-data/sampleMetadata.tsv variableMetadata_in $PROG_PATH/../test-data/variableMetadata.tsv facC qual tesC kruskal adjC fdr thrN 0.05 variableMetadata_out $PROG_PATH/outputVariableMetadata.tsv

if ! diff "$PROG_PATH/outputVariableMetadata.tsv" "$PROG_PATH/../test-data/output-variableMetadata.tsv" ; then
	echo "Incorrect output variable metadata." >&2
	exit 1
fi