Mercurial > repos > ethevenot > univariate
view runit/univariate_tests.R @ 2:09799fc16bc6 draft
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 2c0d4d97c208edca1ada2035a7b7af9c4eb31afe
author | ethevenot |
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date | Sat, 06 Aug 2016 12:42:42 -0400 |
parents | |
children | 140290de7986 |
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test_input_kruskal <- function() { testDirC <- "input" argLs <- list(facC = "ageGroup", tesC = "kruskal", adjC = "fdr", thrN = "0.05") argLs <- c(defaultArgF(testDirC), argLs) outLs <- wrapperCallF(argLs) checkEqualsNumeric(outLs[["varDF"]]["HMDB01032", "ageGroup_kruskal_senior.experienced_pva"], 0.1231246, tolerance = 1e-6) } test_example1_wilcoxDif <- function() { testDirC <- "example1" argLs <- list(facC = "jour", tesC = "wilcoxon", adjC = "fdr", thrN = "0.05") argLs <- c(defaultArgF(testDirC), argLs) outLs <- wrapperCallF(argLs) checkEqualsNumeric(outLs[["varDF"]]["MT3", "jour_wilcoxon_J3.J10_dif"], 0.216480042, tolerance = 1e-8) } test_example1_ttestFdr <- function() { testDirC <- "example1" argLs <- list(facC = "jour", tesC = "ttest", adjC = "fdr", thrN = "0.05") argLs <- c(defaultArgF(testDirC), argLs) outLs <- wrapperCallF(argLs) checkEqualsNumeric(outLs[["varDF"]]["MT3", "jour_ttest_J3.J10_fdr"], 0.7605966, tolerance = 1e-6) }