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changeset 85:32f8f6bcfd3a draft

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author fabio
date Fri, 06 Oct 2017 13:37:53 -0400
parents f731b24c1109
children 169a250816b4
files ._loadandplot.R ._plotwithscale.R ._testandplot.R loadandplot.xml test-data/._.DS_Store test-data/input/._Controls_regions.bed test-data/input/._Elements1_regions.bed test-data/input/._Elements2_regions.bed test-data/input/._Elements3_regions.bed test-data/input/._Feature1.bed test-data/input/._Feature2.bed test-data/input/._features.header.bed.txt test-data/input/._regions.header.txt test-data/output_loadandplot/._iwtomics.loadandplot.RData test-data/output_loadandplot/._iwtomics.loadandplot.features.txt test-data/output_loadandplot/._iwtomics.loadandplot.pdf test-data/output_loadandplot/._iwtomics.loadandplot.regions.txt test-data/output_plotwithscale/._iwtomics.plotwithscale.adjustedpvalue.txt test-data/output_plotwithscale/._iwtomics.plotwithscale.iwtomicstestresults.pdf test-data/output_plotwithscale/._iwtomics.plotwithscale.summaryplot.pdf test-data/output_testandplot/._iwtomics.testandplot.RData test-data/output_testandplot/._iwtomics.testandplot.adjustedpvalue.matrix.txt test-data/output_testandplot/._iwtomics.testandplot.iwtomicstestresults.pdf test-data/output_testandplot/._iwtomics.testandplot.selectedfeatures.txt test-data/output_testandplot/._iwtomics.testandplot.summaryplot.pdf test-data/output_testandplot/._iwtomics.testandplot.tests.txt
diffstat 26 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
Binary file ._loadandplot.R has changed
Binary file ._plotwithscale.R has changed
Binary file ._testandplot.R has changed
--- a/loadandplot.xml	Fri Oct 06 11:07:21 2017 -0400
+++ b/loadandplot.xml	Fri Oct 06 13:37:53 2017 -0400
@@ -15,8 +15,7 @@
       regionsgalaxyids='c(${region_galaxyids})'
       #set region_names = '|'.join( [ str( $r.name ) for $r in $regions ] )
       regionsfilenames='${region_names}'
-      #set region_header = str( $regionsheader )
-      #if $region_header != "None":
+      #if $regionsheader:
         regionsheaderfile='${region_header}'
       #end if
       
@@ -26,8 +25,7 @@
       featuresgalaxyids='c(${feature_galaxyids})'
       #set feature_names = '|'.join( [ str( $f.name ) for $f in $features ] )
       featuresfilenames='${feature_names}'
-      #set feature_header = str( $featuresheader )
-      #if $feature_header != "None":
+      #if $featuresheader:
         featuresheaderfile='${feature_header}'
       #end if
 
Binary file test-data/._.DS_Store has changed
Binary file test-data/input/._Controls_regions.bed has changed
Binary file test-data/input/._Elements1_regions.bed has changed
Binary file test-data/input/._Elements2_regions.bed has changed
Binary file test-data/input/._Elements3_regions.bed has changed
Binary file test-data/input/._Feature1.bed has changed
Binary file test-data/input/._Feature2.bed has changed
Binary file test-data/input/._features.header.bed.txt has changed
Binary file test-data/input/._regions.header.txt has changed
Binary file test-data/output_loadandplot/._iwtomics.loadandplot.RData has changed
Binary file test-data/output_loadandplot/._iwtomics.loadandplot.features.txt has changed
Binary file test-data/output_loadandplot/._iwtomics.loadandplot.pdf has changed
Binary file test-data/output_loadandplot/._iwtomics.loadandplot.regions.txt has changed
Binary file test-data/output_plotwithscale/._iwtomics.plotwithscale.adjustedpvalue.txt has changed
Binary file test-data/output_plotwithscale/._iwtomics.plotwithscale.iwtomicstestresults.pdf has changed
Binary file test-data/output_plotwithscale/._iwtomics.plotwithscale.summaryplot.pdf has changed
Binary file test-data/output_testandplot/._iwtomics.testandplot.RData has changed
Binary file test-data/output_testandplot/._iwtomics.testandplot.adjustedpvalue.matrix.txt has changed
Binary file test-data/output_testandplot/._iwtomics.testandplot.iwtomicstestresults.pdf has changed
Binary file test-data/output_testandplot/._iwtomics.testandplot.selectedfeatures.txt has changed
Binary file test-data/output_testandplot/._iwtomics.testandplot.summaryplot.pdf has changed
Binary file test-data/output_testandplot/._iwtomics.testandplot.tests.txt has changed