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changeset 34:7e5e94fe6b1f draft

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Uploaded 20170531
author fabio
date Wed, 31 May 2017 12:42:49 -0400
parents 40542bd944eb
children 63148eae1c08
files ._ETn_example ._example ._loadandplot.R ._plotwithscale.R ._testandplot.R ETn_example/._.DS_Store ETn_example/._Control.bed ETn_example/._DESCRIPTION.txt ETn_example/._ETn_fixed.bed ETn_example/._Recombination_hotspots.txt ETn_example/._features.header ETn_example/._regions.header example/._.DS_Store example/._Controls_regions.bed example/._DESCRIPTION.txt example/._Elements1_regions.bed example/._Elements2_regions.bed example/._Elements3_regions.bed example/._Feature1.bed example/._Feature2.bed example/._features.header.bed.txt example/._regions.header.txt loadandplot.xml
diffstat 23 files changed, 3 insertions(+), 2 deletions(-) [+]
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Binary file ._ETn_example has changed
Binary file ._example has changed
Binary file ._loadandplot.R has changed
Binary file ._plotwithscale.R has changed
Binary file ._testandplot.R has changed
Binary file ETn_example/._.DS_Store has changed
Binary file ETn_example/._Control.bed has changed
Binary file ETn_example/._DESCRIPTION.txt has changed
Binary file ETn_example/._ETn_fixed.bed has changed
Binary file ETn_example/._Recombination_hotspots.txt has changed
Binary file ETn_example/._features.header has changed
Binary file ETn_example/._regions.header has changed
Binary file example/._.DS_Store has changed
Binary file example/._Controls_regions.bed has changed
Binary file example/._DESCRIPTION.txt has changed
Binary file example/._Elements1_regions.bed has changed
Binary file example/._Elements2_regions.bed has changed
Binary file example/._Elements3_regions.bed has changed
Binary file example/._Feature1.bed has changed
Binary file example/._Feature2.bed has changed
Binary file example/._features.header.bed.txt has changed
Binary file example/._regions.header.txt has changed
--- a/loadandplot.xml	Wed May 31 12:39:59 2017 -0400
+++ b/loadandplot.xml	Wed May 31 12:42:49 2017 -0400
@@ -88,11 +88,12 @@
         #end if
       #end if
 
-      >& /dev/null
+      2> "${stackerr}"
 ]]>
     <!--
     to print the stack add the following line at the end of the command and enable the corresponding entry in output
     2> "${stackerr}"
+    >& /dev/null
     -->
   </command>
 
@@ -225,7 +226,7 @@
   </inputs>
 
   <outputs>
-    <!--<data format="txt" name="stackerr" label="iwtomics.loadandplot.stackerr.txt" from_work_dir="iwtomics.loadandplot.stackerr.txt" />-->
+    <data format="txt" name="stackerr" label="iwtomics.loadandplot.stackerr.txt" from_work_dir="iwtomics.loadandplot.stackerr.txt" />
     <data format="rdata" name="outrdata" label="${tool.name} on ${on_string}: IWTomicsData Object" from_work_dir="iwtomics.loadandplot.RData" />
     <data format="tabular" name="outregions" label="${tool.name} on ${on_string}: Region Dataset IDs" from_work_dir="iwtomics.loadandplot.regions.txt" />
     <data format="tabular" name="outfeatures" label="${tool.name} on ${on_string}: Feature IDs" from_work_dir="iwtomics.loadandplot.features.txt" />