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changeset 54:d49031ef33d5 draft

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Uploaded 20170531
author fabio
date Wed, 31 May 2017 16:25:59 -0400
parents 3d2e03e9c526
children 7698612e1dc7
files ._ETn_example ._example ._loadandplot.R ._plotwithscale.R ._testandplot.R ETn_example/._.DS_Store ETn_example/._Control.bed ETn_example/._DESCRIPTION.txt ETn_example/._ETn_fixed.bed ETn_example/._Recombination_hotspots.txt ETn_example/._features.header ETn_example/._regions.header example/._.DS_Store example/._Controls_regions.bed example/._DESCRIPTION.txt example/._Elements1_regions.bed example/._Elements2_regions.bed example/._Elements3_regions.bed example/._Feature1.bed example/._Feature2.bed example/._features.header.bed.txt example/._regions.header.txt loadandplot.xml plotwithscale.xml testandplot.xml
diffstat 25 files changed, 12 insertions(+), 4 deletions(-) [+]
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--- a/loadandplot.xml	Wed May 31 15:26:42 2017 -0400
+++ b/loadandplot.xml	Wed May 31 16:25:59 2017 -0400
@@ -290,12 +290,20 @@
 
 **Notes**
 
-This Galaxy tool has been developed by Fabio Cumbo (Third University of Rome, Italy) and Marzia A. Cremona (The Pennsylvania State University, USA).
+This Galaxy tool has been developed by Fabio Cumbo (Third University of Rome, Italy - fabio.cumbo@iasi.cnr.it) and Marzia A. Cremona (The Pennsylvania State University, USA - mac78@psu.edu).
 
 It implements a simplified version of the methods *smooth* and *plot* for *IWTomicsData* objects.
 The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_).
 
 .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf
+
+Example data can be found at:
+
+1. Simulated_data_
+2. ETn_data_
+
+.. _Simulated_data: https://usegalaxy.org/u/fabio-cumbo/h/iwtomics-example
+.. _ETn_data: https://usegalaxy.org/u/fabio-cumbo/h/iwtomics-etn-example
   </help>
 
   <citations>
@@ -316,7 +324,7 @@
                iwtomics,
                author = {Cremona, Marzia A and Pini, Alessia and Chiaromonte, Francesca and Vantini, Simone},
                title = {IWTomics: Interval-Wise Testing for Omics Data},
-               note = {R package version 0.99.12},
+               note = {R package version 1.0.0},
                year = {2017}
       }
     </citation>
--- a/plotwithscale.xml	Wed May 31 15:26:42 2017 -0400
+++ b/plotwithscale.xml	Wed May 31 16:25:59 2017 -0400
@@ -192,7 +192,7 @@
                iwtomics,
                author = {Cremona, Marzia A and Pini, Alessia and Chiaromonte, Francesca and Vantini, Simone},
                title = {IWTomics: Interval-Wise Testing for Omics Data},
-               note = {R package version 0.99.12},
+               note = {R package version 1.0.0},
                year = {2017}
       }
     </citation>
--- a/testandplot.xml	Wed May 31 15:26:42 2017 -0400
+++ b/testandplot.xml	Wed May 31 16:25:59 2017 -0400
@@ -230,7 +230,7 @@
                iwtomics,
                author = {Cremona, Marzia A and Pini, Alessia and Chiaromonte, Francesca and Vantini, Simone},
                title = {IWTomics: Interval-Wise Testing for Omics Data},
-               note = {R package version 0.99.12},
+               note = {R package version 1.0.0},
                year = {2017}
       }
     </citation>