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comparison query.xml @ 18:dd3c4fd64402 draft

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Uploaded 20180223
author fabio
date Fri, 23 Feb 2018 13:21:14 -0500
parents b71df3e43248
children 7944301895cb
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17:c1b3f3510219 18:dd3c4fd64402
39 </when> 39 </when>
40 <when value="1"> 40 <when value="1">
41 <param name="sequences" type="text" area="True" size="5x25" label="Manually insert sequences" optional="false" help="Insert a list of (ID, TRANSCRIPT) couples in a tab delimited format, one for each line. The content of this text box will represent a query to the AllSome Sequence Bloom Tree Search Engine that will return a collection containing a file for each ID. The content of these files as result of the tool will be a list of accession numbers." /> 41 <param name="sequences" type="text" area="True" size="5x25" label="Manually insert sequences" optional="false" help="Insert a list of (ID, TRANSCRIPT) couples in a tab delimited format, one for each line. The content of this text box will represent a query to the AllSome Sequence Bloom Tree Search Engine that will return a collection containing a file for each ID. The content of these files as result of the tool will be a list of accession numbers." />
42 </when> 42 </when>
43 </conditional> 43 </conditional>
44 <param name="sthreshold" size="3" type="float" value="0.5" min="0.0" max="1.0" label="Search threshold" help="This threshold controls the specificity. Lower values will produce more hits to the query. Higher values are more stringent and will produce fewer hits." /> 44 <param name="sthreshold" size="3" type="float" value="0.7" min="0.0" max="1.0" label="Search threshold" help="This threshold controls the specificity. Lower values will produce more hits to the query. Higher values are more stringent and will produce fewer hits." />
45 </inputs> 45 </inputs>
46 <outputs> 46 <outputs>
47 <collection name="output_collect" type="list" label="AllSome Sequence Bloom Tree Search Collection"> 47 <collection name="output_collect" type="list" label="AllSome Sequence Bloom Tree Search Collection">
48 <discover_datasets pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;ext&gt;[^_]+)" directory="collection_content" ext="auto" /> 48 <discover_datasets pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;ext&gt;[^_]+)" directory="collection_content" ext="auto" />
49 </collection> 49 </collection>