Mercurial > repos > fangly > copyrighter
diff test_data/out2.biom @ 0:7a7ecf9b9df7 draft
Initial upload
author | fangly |
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date | Mon, 29 Jul 2013 06:52:36 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test_data/out2.biom Mon Jul 29 06:52:36 2013 -0400 @@ -0,0 +1,137 @@ +{ + "generated_by" : "Bio::Community version 0.1", + "matrix_type" : "sparse", + "date" : "2013-07-27T03:32:37", + "data" : [ + [ + 0, + 0, + 78.997461928934 + ], + [ + 1, + 0, + 21.002538071066 + ], + [ + 0, + 1, + 57.7458256029685 + ], + [ + 2, + 1, + 16.6666666666667 + ], + [ + 1, + 1, + 25.5875077303649 + ], + [ + 2, + 2, + 10 + ], + [ + 1, + 2, + 17.4757281553398 + ], + [ + 3, + 2, + 43.5145631067961 + ], + [ + 4, + 2, + 29.0097087378641 + ] + ], + "rows" : [ + { + "metadata" : { + "taxonomy" : [ + "k__Bacteria", + "p__Cyanobacteria", + "c__Nostocophycideae", + "o__Nostocales", + "f__Nostocaceae", + "g__Dolichospermum", + "s__" + ] + }, + "id" : "1" + }, + { + "metadata" : { + "taxonomy" : [ + "k__Bacteria", + "p__Firmicutes", + "c__Clostridia", + "o__Halanaerobiales", + "f__Halanaerobiaceae", + "g__Halanaerobium", + "s__" + ] + }, + "id" : "3" + }, + { + "metadata" : null, + "id" : "4" + }, + { + "metadata" : { + "taxonomy" : [ + "k__Bacteria", + "p__Proteobacteria", + "c__Gammaproteobacteria", + "o__Enterobacteriales", + "f__Enterobacteriaceae", + "g__Escherichia", + "s__" + ] + }, + "id" : "0" + }, + { + "metadata" : { + "taxonomy" : [ + "k__Archaea", + "p__Euryarchaeota", + "c__Methanomicrobia", + "o__Methanosarcinales", + "f__Methanosarcinaceae", + "g__Methanosarcina", + "s__mazei" + ] + }, + "id" : "2" + } + ], + "matrix_element_type" : "float", + "format_url" : "http://biom-format.org/documentation/format_versions/biom-1.0.html", + "format" : "Biological Observation Matrix 1.0", + "columns" : [ + { + "metadata" : null, + "id" : "Sample1" + }, + { + "metadata" : null, + "id" : "Sample2" + }, + { + "metadata" : null, + "id" : "Sample3" + } + ], + "shape" : [ + 5, + 3 + ], + "id" : "", + "type" : "OTU table" +}