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view test-data/in.biom @ 1:658ad8b92341 draft default tip
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author | fangly |
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date | Mon, 29 Jul 2013 07:01:57 -0400 |
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{ "id": "Human microbiomes", "comment": "This is an optional comment", "format": "Biological Observation Matrix 0.9.1-dev", "format_url": "http://biom-format.org/documentation/format_versions/biom-1.0.html", "type": "OTU table", "generated_by": "QIIME revision 1.4.0-dev", "date": "2011-12-19T19:00:00", "rows":[ {"id":"0", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}, {"id":"1", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}}, {"id":"2", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__mazei"]}}, {"id":"3", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__"]}}, {"id":"4", "metadata":{"taxonomy":[]}} ], "columns":[ {"id":"Sample1", "metadata":{ "BarcodeSequence":"CGCTTATCGAGA", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample2", "metadata":{ "BarcodeSequence":"CATACCAGTAGC", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample3", "metadata":{ "BarcodeSequence":"CTCTCTACCTGT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human skin"}} ], "matrix_type": "sparse", "matrix_element_type": "int", "shape": [5, 3], "data":[[0,2,4], [1,0,5], [1,1,3], [2,2,3], [3,0,2], [3,1,2], [3,2,2], [4,1,1], [4,2,1] ] }