Mercurial > repos > fangly > grinder
annotate tool-data/all_fasta.loc.sample @ 4:8c1cbee38ffd
Uploaded
| author | fangly |
|---|---|
| date | Tue, 04 Oct 2011 01:52:39 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 4 | 1 #This file lists the locations and dbkeys of all the fasta files |
| 2 #under the "genome" directory (a directory that contains a directory | |
| 3 #for each build). The script extract_fasta.py will generate the file | |
| 4 #all_fasta.loc. | |
| 5 #IMPORTANT: EACH LINE OF THIS FILE HAS TO BE TAB-DELIMITED! | |
| 6 # | |
| 7 #<unique_build_id> <dbkey> <display_name> <file_path> | |
| 8 # | |
| 9 #So, all_fasta.loc could look something like this: | |
| 10 # | |
| 11 #ncbi_refseq_complete_viruses ncbi_refseq_complete_viruses RefSeq complete viruses /path/to/ncbi_refseq_complete_viruses.fna | |
| 12 #ncbi_refseq_complete_microbes ncbi_refseq_complete_microbes RefSeq complete microbes /path/to/ncbi_refseq_complete_microbes.fna | |
| 13 #homo_sapiens_GRCh37 homo_sapiens_GRCh37 Homo sapiens genome /path/to/Homo_sapiens_GRCh37_reference.fna | |
| 14 #gg_named_16S gg_named_16S GreenGenes named 16S strains /path/to/Isolated_named_strains_16S.fna | |
| 15 |