Mercurial > repos > fcaramia > contra

changeset 11:b6ce842a633d

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Deleted selected files
author fcaramia
date Sun, 02 Dec 2012 23:09:56 -0500
parents 6a3c6e45dd4e
children d63052c0d852
files tool_dependencies.xml
diffstat 1 files changed, 0 insertions(+), 22 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Dec 02 20:32:42 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="bedtools" version="2.17.0">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
-                <action type="shell_command">tar -zxvf BEDTools.v2.17.0.tar.gz </action>
-                <action type="shell_command">cd BEDTools.v2.17.0</action>
-                <action type="shell_command">make clean</action>
-                <action type="shell_command">make all</action>
-                <action type="shell_command">cp bin/* $INSTALL_DIR/bin</action>
-                
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools
-        </readme>
-    </package>
-</tool_dependency>