Mercurial > repos > fcaramia > methylation_analysis_bismark

annotate bismark_indices.loc.sample @ 6:4f09ae8138d1 draft

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author fcaramia
date Mon, 03 Dec 2012 18:27:21 -0500
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2 # Genomes have been coverted using bismark_genome_preparation script. Index points to the directory containing the genome and the methylated genome folder
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4 #bismark.hg19.GRCh37.62 hg19 hg19 ensembl GRCh37.62 /galaxy/indexes/human/ensembl_GRCh37.62/bowtie2/illumina/
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5 #bismark.hg19.b37 b37 hg19 1000 genomes b37 /galaxy/indexes/human/g1k_v37/bowtie2/illumina/
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6 #bismark.mm9.NCBIM37.62 mm9 mm9 ensembl NCBIM37.62 /galaxy/indexes/mouse/ensembl_NCBIM37.62/bowtie2/illumina/
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7 #bismark.dm3.BDGP5.25.62 dm3 dm3 ensembl BDGP5.25.62 /galaxy/indexes/fruitfly/ensembl_BDGP5.25.62/bowtie2/illumina/