Mercurial > repos > fcaramia > methylation_analysis_bismark

changeset 6:4f09ae8138d1 draft

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Uploaded
author fcaramia
date Mon, 03 Dec 2012 18:27:21 -0500
parents 23fed0cf09f4
children c4416c3af217
files bismark_indices.loc.sample
diffstat 1 files changed, 7 insertions(+), 0 deletions(-) [+]
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+++ b/bismark_indices.loc.sample	Mon Dec 03 18:27:21 2012 -0500
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+# Genomes have been coverted using bismark_genome_preparation script. Index points to the directory containing the genome and the methylated genome folder
+
+#bismark.hg19.GRCh37.62	hg19	hg19 ensembl GRCh37.62	/galaxy/indexes/human/ensembl_GRCh37.62/bowtie2/illumina/
+#bismark.hg19.b37	b37	hg19 1000 genomes b37	/galaxy/indexes/human/g1k_v37/bowtie2/illumina/
+#bismark.mm9.NCBIM37.62	 mm9	mm9 ensembl NCBIM37.62	/galaxy/indexes/mouse/ensembl_NCBIM37.62/bowtie2/illumina/
+#bismark.dm3.BDGP5.25.62	dm3	dm3 ensembl BDGP5.25.62	/galaxy/indexes/fruitfly/ensembl_BDGP5.25.62/bowtie2/illumina/