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1 DEPENDENCES
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2
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3 The wrapper needs BioPerl and InterProScan and it runs on a linux system.
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4
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5 To install BioPerl:
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6 http://www.bioperl.org/wiki/Installing_BioPerl
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7
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8 To install InterProScan:
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9 http://code.google.com/p/interproscan/wiki/HowToDownload
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10
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11
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12
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13 ## INSTALLATION WRAPPER INSTRUCTIONS
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14
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15 # Stop your local Galaxy
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16
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17 # Change to your_galaxy_path/tools
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18 > cd your_galaxy_path/tools
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19
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20 # Uncompress tar.gz file into "tools" directory.
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21 > tar -xvfz interpro.tar.gz
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22
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23 # Edit "paso3.sh" file and change InterProScan path to your local InterProScan path.
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24
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25 # Go to the root galaxy directory, edit "tool_conf.xml" and insert this code block in the site where you would like to see the tool on the toolbar:
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26
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27 <section id="LaGiFer" name="Protein Functional Analysis Similarities">
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28 <tool file="interpro/paso1.xml" />
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29 <tool file="interpro/paso2.xml" />
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30 <tool file="interpro/paso3.xml" />
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31 <tool file="interpro/paso4.xml" />
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32 </section>
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33
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34
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35 # Run your Galaxy
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36 > ./run.sh
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37
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38 ## INSTALLATION WORKFLOW INSTRUCTIONS
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39
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40 # To install the workflow to run these tools, press "Upload or import workflow" from workflow menu, then select the .ga file through the "browse" (examinar) bottom and import it.
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41
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42 Select "Configure your workflow menu" and click on "Show in menu" item and press "send".
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43
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44
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45
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46 Thank you very much for using our Protein "Functional Analysis Similarities" wrapper
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47
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48 For additional details or reporting errors please contact us.
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49
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50
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51 gines.a@hotmail.com
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52 fernando.perez8@um.es
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53 lentram@um.es
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54
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55
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