Mercurial > repos > fernando > protein_funcional_analysis_similarities
comparison interpro/INSTALL.txt @ 0:c342ebb50f0b draft default tip
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| author | fernando |
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| date | Thu, 22 May 2014 05:09:07 -0400 |
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| -1:000000000000 | 0:c342ebb50f0b |
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| 1 DEPENDENCES | |
| 2 | |
| 3 The wrapper needs BioPerl and InterProScan and it runs on a linux system. | |
| 4 | |
| 5 To install BioPerl: | |
| 6 http://www.bioperl.org/wiki/Installing_BioPerl | |
| 7 | |
| 8 To install InterProScan: | |
| 9 http://code.google.com/p/interproscan/wiki/HowToDownload | |
| 10 | |
| 11 | |
| 12 | |
| 13 ## INSTALLATION WRAPPER INSTRUCTIONS | |
| 14 | |
| 15 # Stop your local Galaxy | |
| 16 | |
| 17 # Change to your_galaxy_path/tools | |
| 18 > cd your_galaxy_path/tools | |
| 19 | |
| 20 # Uncompress tar.gz file into "tools" directory. | |
| 21 > tar -xvfz interpro.tar.gz | |
| 22 | |
| 23 # Edit "paso3.sh" file and change InterProScan path to your local InterProScan path. | |
| 24 | |
| 25 # Go to the root galaxy directory, edit "tool_conf.xml" and insert this code block in the site where you would like to see the tool on the toolbar: | |
| 26 | |
| 27 <section id="LaGiFer" name="Protein Functional Analysis Similarities"> | |
| 28 <tool file="interpro/paso1.xml" /> | |
| 29 <tool file="interpro/paso2.xml" /> | |
| 30 <tool file="interpro/paso3.xml" /> | |
| 31 <tool file="interpro/paso4.xml" /> | |
| 32 </section> | |
| 33 | |
| 34 | |
| 35 # Run your Galaxy | |
| 36 > ./run.sh | |
| 37 | |
| 38 ## INSTALLATION WORKFLOW INSTRUCTIONS | |
| 39 | |
| 40 # To install the workflow to run these tools, press "Upload or import workflow" from workflow menu, then select the .ga file through the "browse" (examinar) bottom and import it. | |
| 41 | |
| 42 Select "Configure your workflow menu" and click on "Show in menu" item and press "send". | |
| 43 | |
| 44 | |
| 45 | |
| 46 Thank you very much for using our Protein "Functional Analysis Similarities" wrapper | |
| 47 | |
| 48 For additional details or reporting errors please contact us. | |
| 49 | |
| 50 | |
| 51 gines.a@hotmail.com | |
| 52 fernando.perez8@um.es | |
| 53 lentram@um.es | |
| 54 | |
| 55 |