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planemo upload commit 399d2714dd85043f2ed8bdeff05bb1ccd4c5dd29
author fgiacomoni
date Fri, 27 Nov 2020 10:06:35 +0000
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94eeed7f737f planemo upload commit 399d2714dd85043f2ed8bdeff05bb1ccd4c5dd29
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1 # ref install: ubuntu 20.04
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2 FROM ubuntu:20.04
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4 # init var
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5 ARG DEBIAN_FRONTEND=noninteractive
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7 # set author
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8 MAINTAINER Franck Giacomoni <franck.giacomoni.fr>
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10 ###
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11 ### [CONTAINER CORE FUNCTIONS]:
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12 ### xxxx
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13 ### xxxx
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14 ### [NOTES]
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15 ### xxxx
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17 ENV PATH /opt/conda/bin:$PATH
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19 RUN apt-get -y update &&\
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20 apt-get -y install build-essential \
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21 cpanminus \
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22 gzip \
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23 wget \
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24 bzip2 \
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25 ca-certificates \
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26 libglib2.0-0 \
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27 libxext6 \
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28 libsm6 \
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29 libxrender1 \
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30 libtext-csv-perl \
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31 libxml-twig-perl \
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32 libfile-share-perl
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34 RUN wget --quiet https://repo.anaconda.com/archive/Anaconda3-5.3.0-Linux-x86_64.sh -O ~/anaconda.sh && \
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35 /bin/bash ~/anaconda.sh -b -p /opt/conda && \
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36 rm ~/anaconda.sh && \
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37 ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
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38 echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
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39 echo "conda activate base" >> ~/.bashrc
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41 RUN cpan install ExtUtils::MakeMaker && \
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42 cpan install File::ShareDir::Install && \
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43 cpan install Module::Release && \
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44 cpan install Archive::Zip && \
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45 apt -y install git &&\
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46 apt -y install python3 python3-pip && \
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47 apt -y install virtualenv && \
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48 pip install "pip>=7" && \
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49 pip install -U git+git://github.com/galaxyproject/planemo.git && \
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50 apt-get autoremove -y && \
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51 apt-get clean && \
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52 rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
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