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comparison bih4maconda.xml @ 1:2744d20c830a draft default tip

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" master branch Updating with tag :CI_COMMIT_TAG - - Fxx"
author fgiacomoni
date Fri, 27 Nov 2020 11:21:58 +0000
parents de13e2c45971
children
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0:de13e2c45971 1:2744d20c830a
1 <tool id="bih4maconda" name="Bih4MaConDa" version="0.1.3"> 1 <tool id="bih4maconda" name="Bih4MaConDa" version="0.1.4">
2 <description> 2 <description>
3 : Utility to detect potential contaminants in your peak list based on MaConDa database 3 : Utility to detect potential contaminants in your peak list based on MaConDa database
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="0.2.0">perl-metabolomics-fragment-annotation</requirement> 6 <requirement type="package" version="0.6.3">perl-metabolomics-fragment-annotation</requirement>
7 </requirements> 7 </requirements>
8 <stdio> 8 <stdio>
9 <exit_code range="1" level="fatal" /> 9 <exit_code range="1" level="fatal" />
10 </stdio> 10 </stdio>
11 11
54 </inputs> 54 </inputs>
55 <outputs> 55 <outputs>
56 <data name="outFull" format="tabular" label="${variableMetadata_in.name[:-6]}.BIH4MACONDA_Full.tabular" /> 56 <data name="outFull" format="tabular" label="${variableMetadata_in.name[:-6]}.BIH4MACONDA_Full.tabular" />
57 <data name="outputTab" format="tabular" label="${variableMetadata_in.name[:-6]}.BIH4MACONDA.tabular" /> 57 <data name="outputTab" format="tabular" label="${variableMetadata_in.name[:-6]}.BIH4MACONDA.tabular" />
58 </outputs> 58 </outputs>
59 59 <tests>
60 <!--test 01 : short input id, mz and rt data -->
61 <test>
62 <param name="variableMetadata_in" value="in_test01_pos.tabular"/>
63 <param name="header_choice" value="YES"/>
64 <param name="header" value="1"/>
65 <param name="colmass" value="2"/>
66 <param name="ppm_error" value="5"/>
67 <param name="mode" value="POSITIVE"/>
68 <param name="verbose" value="3"/>
69 <output name="outFull" file="outFull_test01.tabular"/>
70 <output name="outputTab" file="outTab_test01.tabular"/>
71 </test>
72 </tests>
60 <help><![CDATA[ 73 <help><![CDATA[
61 74
62 .. class:: infomark 75 .. class:: infomark
63 76
64 **Authors** 77 **Authors**
65 | Franck Giacomoni - FLAME ; PFEM ; INRA ; MetaboHUB (for original version and development of this Perl script and for xml interface and Perl wrapper) 78 | Franck Giacomoni - FLAME ; PFEM ; INRA ; MetaboHUB (for original version and development of this Perl script and for xml interface and Perl wrapper) - based on the Perl CPAN package Metabolomics::Fragmentation::Annotation
66 79
67 --------------------------------------------------- 80 ---------------------------------------------------
68 81
69 82
70 ====================== 83 ======================
166 | Format Data For Postprocessing 179 | Format Data For Postprocessing
167 | Perform LCMS Annotations 180 | Perform LCMS Annotations
168 181
169 .. class:: warningmark 182 .. class:: warningmark
170 183
171 And their "W4M courses 2018": 184 And their "W4M courses 2019":
172 | Using Galaxy4Metabolomics - W4M table format for Galaxy 185 | Using Galaxy4Metabolomics - W4M table format for Galaxy
173 | Annotation Banks - Annotation 186 | Annotation Banks - Annotation
174 187
175 ]]></help> 188 ]]></help>
176 <citations> 189 <citations>