Mercurial > repos > fgiacomoni > bih4maconda
diff bih4maconda.xml @ 1:2744d20c830a draft default tip
" master branch Updating with tag :CI_COMMIT_TAG - - Fxx"
| author | fgiacomoni |
|---|---|
| date | Fri, 27 Nov 2020 11:21:58 +0000 |
| parents | de13e2c45971 |
| children |
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--- a/bih4maconda.xml Tue Jan 21 15:49:00 2020 -0500 +++ b/bih4maconda.xml Fri Nov 27 11:21:58 2020 +0000 @@ -1,9 +1,9 @@ -<tool id="bih4maconda" name="Bih4MaConDa" version="0.1.3"> +<tool id="bih4maconda" name="Bih4MaConDa" version="0.1.4"> <description> : Utility to detect potential contaminants in your peak list based on MaConDa database </description> <requirements> - <requirement type="package" version="0.2.0">perl-metabolomics-fragment-annotation</requirement> + <requirement type="package" version="0.6.3">perl-metabolomics-fragment-annotation</requirement> </requirements> <stdio> <exit_code range="1" level="fatal" /> @@ -56,13 +56,26 @@ <data name="outFull" format="tabular" label="${variableMetadata_in.name[:-6]}.BIH4MACONDA_Full.tabular" /> <data name="outputTab" format="tabular" label="${variableMetadata_in.name[:-6]}.BIH4MACONDA.tabular" /> </outputs> - + <tests> + <!--test 01 : short input id, mz and rt data --> + <test> + <param name="variableMetadata_in" value="in_test01_pos.tabular"/> + <param name="header_choice" value="YES"/> + <param name="header" value="1"/> + <param name="colmass" value="2"/> + <param name="ppm_error" value="5"/> + <param name="mode" value="POSITIVE"/> + <param name="verbose" value="3"/> + <output name="outFull" file="outFull_test01.tabular"/> + <output name="outputTab" file="outTab_test01.tabular"/> + </test> + </tests> <help><![CDATA[ .. class:: infomark **Authors** - | Franck Giacomoni - FLAME ; PFEM ; INRA ; MetaboHUB (for original version and development of this Perl script and for xml interface and Perl wrapper) + | Franck Giacomoni - FLAME ; PFEM ; INRA ; MetaboHUB (for original version and development of this Perl script and for xml interface and Perl wrapper) - based on the Perl CPAN package Metabolomics::Fragmentation::Annotation --------------------------------------------------- @@ -168,7 +181,7 @@ .. class:: warningmark -And their "W4M courses 2018": +And their "W4M courses 2019": | Using Galaxy4Metabolomics - W4M table format for Galaxy | Annotation Banks - Annotation