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1 FROM ubuntu:18.04
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2
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3 # set author
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4 MAINTAINER Franck Giacomoni <franck.giacomoni.fr>
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5
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6 ###
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7 ### [CONTAINER CORE FUNCTIONS]:
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8 ### xxxx
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9 ### xxxx
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10 ### [NOTES]
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11 ### xxxx
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12
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13 ENV PATH /opt/conda/bin:$PATH
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14
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15 RUN apt-get -y update &&\
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16 apt-get -y install build-essential \
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17 cpanminus \
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18 gzip \
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19 wget \
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20 bzip2 \
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21 ca-certificates \
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22 libglib2.0-0 \
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23 libxext6 \
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24 libsm6 \
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25 libxrender1 \
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26 libtext-csv-perl \
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27 libxml-twig-perl \
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28 libfile-share-perl
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29
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30 RUN wget --quiet https://repo.anaconda.com/archive/Anaconda3-5.3.0-Linux-x86_64.sh -O ~/anaconda.sh && \
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31 /bin/bash ~/anaconda.sh -b -p /opt/conda && \
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32 rm ~/anaconda.sh && \
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33 ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
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34 echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
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35 echo "conda activate base" >> ~/.bashrc
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36
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37 RUN cpan install ExtUtils::MakeMaker && \
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38 cpan install File::ShareDir::Install && \
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39 cpan install Module::Release &&\
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40 cpan install Archive::Zip &&\
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41
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42 apt -y install git &&\
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43 apt -y install python2.7 python-pip &&\
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44 apt -y install virtualenv &&\
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45 pip install "pip>=7" &&\
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46 pip install -U git+git://github.com/galaxyproject/planemo.git &&\
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47
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48 apt-get autoremove -y && \
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49 apt-get clean && \
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50 rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
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51
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