Mercurial > repos > fgiacomoni > downloader_bank_hmdb

comparison conf.cfg @ 2:be504ccbc41c draft default tip

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master branch Updating with tag :CI_COMMIT_TAG - - Fxx
author fgiacomoni
date Wed, 30 Nov 2022 16:14:27 +0000
parents 7c9269bded0e
children
comparison
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1:4373f936111d 2:be504ccbc41c
2 # 2 #
3 ## Version 3 ## Version
4 VERSION=1.1 4 VERSION=1.1
5 ##v1.0 : Init 5 ##v1.0 : Init
6 ##V1.1 : calculating and adding [M+H]+ and [M-H]- mono isotopic mass in banks 6 ##V1.1 : calculating and adding [M+H]+ and [M-H]- mono isotopic mass in banks
7 ##V1.1.1 : Links updating
7 # 8 #
8 ## ARGVT 9 ## ARGVT
9 PROTON_MASS=1.007825 10 PROTON_MASS=1.007825
10 ELECTRON_MASS=0.0005486 11 ELECTRON_MASS=0.0005486
11 #CHARGE=1 12 #CHARGE=1
13 #LOCAL BANKS VERSIONNING 14 #LOCAL BANKS VERSIONNING
14 LOCALBANK_PATH=banks 15 LOCALBANK_PATH=banks
15 16
16 #HMDB archive url 17 #HMDB archive url
17 HMDB_URL= 18 HMDB_URL=
18 ## Serum 19 ## Sweat - added 22/11/28
19 SERUM_URL=http://www.hmdb.ca/system/downloads/current/serum_metabolites.zip 20 SWEAT_URL=https://hmdb.ca/system/downloads/current/sweat_metabolites.zip
21 SWEAT_FILE_NAME=sweat_metabolites.xml
22 SWEAT_HTTP_FORMAT=ZIP
23 SWEAT_DB_FORMAT=XML
24 ## Serum - updated 22/11/28
25 SERUM_URL=https://hmdb.ca/system/downloads/current/serum_metabolites.zip
20 SERUM_FILE_NAME=serum_metabolites.xml 26 SERUM_FILE_NAME=serum_metabolites.xml
21 SERUM_HTTP_FORMAT=ZIP 27 SERUM_HTTP_FORMAT=ZIP
22 SERUM_DB_FORMAT=XML 28 SERUM_DB_FORMAT=XML
23 ## Urine 29 ## Urine - updated 22/11/28
24 URINE_URL=http://www.hmdb.ca/system/downloads/current/urine_metabolites.zip 30 URINE_URL=https://hmdb.ca/system/downloads/current/urine_metabolites.zip
25 URINE_FILE_NAME=urine_metabolites.xml 31 URINE_FILE_NAME=urine_metabolites.xml
26 URINE_HTTP_FORMAT=ZIP 32 URINE_HTTP_FORMAT=ZIP
27 URINE_DB_FORMAT=XML 33 URINE_DB_FORMAT=XML
28 ## Other matrices: 34 ## Other matrices:
29 ## CSF 35 ## CSF - updated 22/11/28
30 CSF_URL=http://www.hmdb.ca/system/downloads/current/csf_metabolites.zip 36 CSF_URL=https://hmdb.ca/system/downloads/current/csf_metabolites.zip
31 CSF_FILE_NAME=csf_metabolites.xml 37 CSF_FILE_NAME=csf_metabolites.xml
32 CSF_HTTP_FORMAT=ZIP 38 CSF_HTTP_FORMAT=ZIP
33 CSF_DB_FORMAT=XML 39 CSF_DB_FORMAT=XML
34 ##FECES 40 ##FECES - updated 22/11/28
35 FECES_URL=http://www.fecalmetabolome.ca/system/downloads/current/feces_metabolites.zip 41 FECES_URL=https://hmdb.ca/system/downloads/current/feces_metabolites.zip
36 FECES_FILE_NAME=feces_metabolites.xml 42 FECES_FILE_NAME=feces_metabolites.xml
37 FECES_HTTP_FORMAT=ZIP 43 FECES_HTTP_FORMAT=ZIP
38 FECES_DB_FORMAT=XML 44 FECES_DB_FORMAT=XML
39 ##SALIVA 45 ##SALIVA - updated 22/11/28
40 SALIVA_URL=http://www.salivametabolome.ca/system/downloads/current/saliva_metabolites.zip 46 SALIVA_URL=https://hmdb.ca/system/downloads/current/saliva_metabolites.zip
41 SALIVA_FILE_NAME=saliva_metabolites.xml 47 SALIVA_FILE_NAME=saliva_metabolites.xml
42 SALIVA_HTTP_FORMAT=ZIP 48 SALIVA_HTTP_FORMAT=ZIP
43 SALIVA_DB_FORMAT=XML 49 SALIVA_DB_FORMAT=XML
44 ##RUMEN 50 ##RUMEN - updated 22/11/28
45 RUMEN_URL=http://www.rumendb.ca/public/downloads/current/metabocards.gz 51 #RUMEN_URL=https://www.rumendb.ca/public/downloads/current/metabocards.gz
46 RUMEN_FILE_NAME=metabocards 52 #RUMEN_FILE_NAME=metabocards
47 RUMEN_HTTP_FORMAT=GZ 53 #RUMEN_HTTP_FORMAT=GZ
48 RUMEN_DB_FORMAT=CARD 54 #RUMEN_DB_FORMAT=CARD
49 ##COW 55 ##COW - updated 22/11/28
50 COW_URL=http://www.cowmetdb.ca/public/downloads/current/metabocards.gz 56 COW_URL=https://www.bovinedb.ca/system/downloads/current/bmdb_metabolites.zip
51 COW_FILE_NAME=metabocards 57 COW_FILE_NAME=bmdb_metabolites.xml
52 COW_HTTP_FORMAT=GZ 58 COW_HTTP_FORMAT=ZIP
53 COW_DB_FORMAT=CARD 59 COW_DB_FORMAT=XML
54 ##MILK 60 ##MILK - updated 22/11/28
55 MILK_URL=http://www.mcdb.ca/system/downloads/current/milk_metabolites.zip 61 MILK_URL=https://mcdb.ca/system/downloads/current/milk_metabolites.zip
56 MILK_FILE_NAME=milk_metabolites.xml 62 MILK_FILE_NAME=milk_metabolites.xml
57 MILK_HTTP_FORMAT=ZIP 63 MILK_HTTP_FORMAT=ZIP
58 MILK_DB_FORMAT=XML 64 MILK_DB_FORMAT=XML
65 ##T3DB
66 TOXIN_URL=http://www.t3db.ca/system/downloads/current/toxins.xml.zip
67 TOXIN_FILE_NAME=toxins.xml
68 TOXIN_HTTP_FORMAT=ZIP
69 TOXIN_DB_FORMAT=XML