Mercurial > repos > fgiacomoni > downloader_bank_hmdb
diff conf.cfg @ 2:be504ccbc41c draft default tip
master branch Updating with tag :CI_COMMIT_TAG - - Fxx
author | fgiacomoni |
---|---|
date | Wed, 30 Nov 2022 16:14:27 +0000 |
parents | 7c9269bded0e |
children |
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--- a/conf.cfg Tue Jan 21 16:09:45 2020 -0500 +++ b/conf.cfg Wed Nov 30 16:14:27 2022 +0000 @@ -4,6 +4,7 @@ VERSION=1.1 ##v1.0 : Init ##V1.1 : calculating and adding [M+H]+ and [M-H]- mono isotopic mass in banks +##V1.1.1 : Links updating # ## ARGVT PROTON_MASS=1.007825 @@ -15,44 +16,54 @@ #HMDB archive url HMDB_URL= -## Serum -SERUM_URL=http://www.hmdb.ca/system/downloads/current/serum_metabolites.zip +## Sweat - added 22/11/28 +SWEAT_URL=https://hmdb.ca/system/downloads/current/sweat_metabolites.zip +SWEAT_FILE_NAME=sweat_metabolites.xml +SWEAT_HTTP_FORMAT=ZIP +SWEAT_DB_FORMAT=XML +## Serum - updated 22/11/28 +SERUM_URL=https://hmdb.ca/system/downloads/current/serum_metabolites.zip SERUM_FILE_NAME=serum_metabolites.xml SERUM_HTTP_FORMAT=ZIP SERUM_DB_FORMAT=XML -## Urine -URINE_URL=http://www.hmdb.ca/system/downloads/current/urine_metabolites.zip +## Urine - updated 22/11/28 +URINE_URL=https://hmdb.ca/system/downloads/current/urine_metabolites.zip URINE_FILE_NAME=urine_metabolites.xml URINE_HTTP_FORMAT=ZIP URINE_DB_FORMAT=XML ## Other matrices: -## CSF -CSF_URL=http://www.hmdb.ca/system/downloads/current/csf_metabolites.zip +## CSF - updated 22/11/28 +CSF_URL=https://hmdb.ca/system/downloads/current/csf_metabolites.zip CSF_FILE_NAME=csf_metabolites.xml CSF_HTTP_FORMAT=ZIP CSF_DB_FORMAT=XML -##FECES -FECES_URL=http://www.fecalmetabolome.ca/system/downloads/current/feces_metabolites.zip +##FECES - updated 22/11/28 +FECES_URL=https://hmdb.ca/system/downloads/current/feces_metabolites.zip FECES_FILE_NAME=feces_metabolites.xml FECES_HTTP_FORMAT=ZIP FECES_DB_FORMAT=XML -##SALIVA -SALIVA_URL=http://www.salivametabolome.ca/system/downloads/current/saliva_metabolites.zip +##SALIVA - updated 22/11/28 +SALIVA_URL=https://hmdb.ca/system/downloads/current/saliva_metabolites.zip SALIVA_FILE_NAME=saliva_metabolites.xml SALIVA_HTTP_FORMAT=ZIP SALIVA_DB_FORMAT=XML -##RUMEN -RUMEN_URL=http://www.rumendb.ca/public/downloads/current/metabocards.gz -RUMEN_FILE_NAME=metabocards -RUMEN_HTTP_FORMAT=GZ -RUMEN_DB_FORMAT=CARD -##COW -COW_URL=http://www.cowmetdb.ca/public/downloads/current/metabocards.gz -COW_FILE_NAME=metabocards -COW_HTTP_FORMAT=GZ -COW_DB_FORMAT=CARD -##MILK -MILK_URL=http://www.mcdb.ca/system/downloads/current/milk_metabolites.zip +##RUMEN - updated 22/11/28 +#RUMEN_URL=https://www.rumendb.ca/public/downloads/current/metabocards.gz +#RUMEN_FILE_NAME=metabocards +#RUMEN_HTTP_FORMAT=GZ +#RUMEN_DB_FORMAT=CARD +##COW - updated 22/11/28 +COW_URL=https://www.bovinedb.ca/system/downloads/current/bmdb_metabolites.zip +COW_FILE_NAME=bmdb_metabolites.xml +COW_HTTP_FORMAT=ZIP +COW_DB_FORMAT=XML +##MILK - updated 22/11/28 +MILK_URL=https://mcdb.ca/system/downloads/current/milk_metabolites.zip MILK_FILE_NAME=milk_metabolites.xml MILK_HTTP_FORMAT=ZIP -MILK_DB_FORMAT=XML \ No newline at end of file +MILK_DB_FORMAT=XML +##T3DB +TOXIN_URL=http://www.t3db.ca/system/downloads/current/toxins.xml.zip +TOXIN_FILE_NAME=toxins.xml +TOXIN_HTTP_FORMAT=ZIP +TOXIN_DB_FORMAT=XML \ No newline at end of file